SMTL ID : 1mos.2 (1 other biounit)

ISOMERASE DOMAIN OF GLUCOSAMINE 6-PHOSPHATE SYNTHASE COMPLEXED WITH 2-AMINO-2-DEOXYGLUCITOL 6-PHOSPHATE

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-hexamer

Ligands

18 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: E.18, N.25, N.152, A.153, G.154 Ligand excluded by PLIP SO4.2: 7 residues within 4Å: Chain A: H.225, H.226, D.273 Chain D: H.225, H.226, D.273 Ligands: SO4.20 Ligand excluded by PLIP SO4.3: 4 residues within 4Å: Chain A: G.300, Q.302, D.317, N.318 Ligand excluded by PLIP SO4.7: 5 residues within 4Å: Chain B: E.18, N.25, N.152, A.153, G.154 Ligand excluded by PLIP SO4.8: 7 residues within 4Å: Chain B: H.225, H.226, D.273 Chain F: H.225, H.226, D.273 Ligands: SO4.32 Ligand excluded by PLIP SO4.9: 4 residues within 4Å: Chain B: G.300, Q.302, D.317, N.318 Ligand excluded by PLIP SO4.13: 5 residues within 4Å: Chain C: E.18, N.25, N.152, A.153, G.154 Ligand excluded by PLIP SO4.14: 7 residues within 4Å: Chain C: H.225, H.226, D.273 Chain E: H.225, H.226, D.273 Ligands: SO4.26 Ligand excluded by PLIP SO4.15: 4 residues within 4Å: Chain C: G.300, Q.302, D.317, N.318 Ligand excluded by PLIP SO4.19: 5 residues within 4Å: Chain D: E.18, N.25, N.152, A.153, G.154 Ligand excluded by PLIP SO4.20: 7 residues within 4Å: Chain A: H.225, H.226, D.273 Chain D: H.225, H.226, D.273 Ligands: SO4.2 Ligand excluded by PLIP SO4.21: 4 residues within 4Å: Chain D: G.300, Q.302, D.317, N.318 Ligand excluded by PLIP SO4.25: 5 residues within 4Å: Chain E: E.18, N.25, N.152, A.153, G.154 Ligand excluded by PLIP SO4.26: 7 residues within 4Å: Chain C: H.225, H.226, D.273 Chain E: H.225, H.226, D.273 Ligands: SO4.14 Ligand excluded by PLIP SO4.27: 4 residues within 4Å: Chain E: G.300, Q.302, D.317, N.318 Ligand excluded by PLIP SO4.31: 5 residues within 4Å: Chain F: E.18, N.25, N.152, A.153, G.154 Ligand excluded by PLIP SO4.32: 7 residues within 4Å: Chain B: H.225, H.226, D.273 Chain F: H.225, H.226, D.273 Ligands: SO4.8 Ligand excluded by PLIP SO4.33: 4 residues within 4Å: Chain F: G.300, Q.302, D.317, N.318 Ligand excluded by PLIP

6 x NA: SODIUM ION(Non-functional Binders)

NA.4: 2 residues within 4Å: Chain A: D.234 Ligands: MES.6 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.234 Water bridges: A:D.234, A:D.234 NA.10: 2 residues within 4Å: Chain B: D.234 Ligands: MES.12 4 PLIP interactions: 4 interactions with chain B Water bridges: B:D.234, B:D.234, B:D.234, B:D.234 NA.16: 2 residues within 4Å: Chain C: D.234 Ligands: MES.18 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:D.234 Water bridges: C:D.234, C:D.234 NA.22: 2 residues within 4Å: Chain D: D.234 Ligands: MES.24 3 PLIP interactions: 3 interactions with chain D Water bridges: D:D.234, D:D.234, D:D.234 NA.28: 2 residues within 4Å: Chain E: D.234 Ligands: MES.30 3 PLIP interactions: 3 interactions with chain E Hydrogen bonds: E:D.234 Water bridges: E:D.234, E:D.234 NA.34: 2 residues within 4Å: Chain F: D.234 Ligands: MES.36 3 PLIP interactions: 3 interactions with chain F Hydrogen bonds: F:D.234 Water bridges: F:D.234, F:D.234

6 x AGP: 2-DEOXY-2-AMINO GLUCITOL-6-PHOSPHATE(Non-covalent)

AGP.5: 15 residues within 4Å: Chain A: C.60, G.61, T.62, S.63, S.107, Q.108, S.109, T.112, V.159, A.160, S.161, K.245, E.248, K.363 Chain D: H.264 15 PLIP interactions: 13 interactions with chain A, 2 interactions with chain D Hydrogen bonds: A:T.62, A:S.63, A:S.63, A:Q.108, A:S.109, A:T.112, A:V.159, A:S.161, A:K.245, A:K.245, D:H.264, D:H.264 Water bridges: A:S.63, A:Q.108, A:V.159 AGP.11: 15 residues within 4Å: Chain B: C.60, G.61, T.62, S.63, S.107, Q.108, S.109, T.112, V.159, A.160, S.161, K.245, E.248, K.363 Chain F: H.264 15 PLIP interactions: 13 interactions with chain B, 2 interactions with chain F Hydrogen bonds: B:T.62, B:S.63, B:S.63, B:Q.108, B:S.109, B:T.112, B:V.159, B:S.161, B:K.245, B:K.245, F:H.264, F:H.264 Water bridges: B:S.63, B:Q.108, B:V.159 AGP.17: 15 residues within 4Å: Chain C: C.60, G.61, T.62, S.63, S.107, Q.108, S.109, T.112, V.159, A.160, S.161, K.245, E.248, K.363 Chain E: H.264 15 PLIP interactions: 13 interactions with chain C, 2 interactions with chain E Hydrogen bonds: C:T.62, C:S.63, C:S.63, C:Q.108, C:S.109, C:T.112, C:V.159, C:S.161, C:K.245, C:K.245, E:H.264, E:H.264 Water bridges: C:S.63, C:Q.108, C:V.159 AGP.23: 15 residues within 4Å: Chain A: H.264 Chain D: C.60, G.61, T.62, S.63, S.107, Q.108, S.109, T.112, V.159, A.160, S.161, K.245, E.248, K.363 18 PLIP interactions: 17 interactions with chain D, 1 interactions with chain A Hydrogen bonds: D:T.62, D:T.62, D:S.63, D:S.63, D:Q.108, D:S.109, D:T.112, D:T.112, D:V.159, D:S.161, D:K.245, D:K.245, A:H.264 Water bridges: D:S.63, D:Q.108, D:V.159, D:E.248, D:E.248 AGP.29: 15 residues within 4Å: Chain C: H.264 Chain E: C.60, G.61, T.62, S.63, S.107, Q.108, S.109, T.112, V.159, A.160, S.161, K.245, E.248, K.363 18 PLIP interactions: 17 interactions with chain E, 1 interactions with chain C Hydrogen bonds: E:T.62, E:T.62, E:S.63, E:S.63, E:Q.108, E:S.109, E:T.112, E:T.112, E:V.159, E:S.161, E:K.245, E:K.245, C:H.264 Water bridges: E:S.63, E:Q.108, E:V.159, E:E.248, E:E.248 AGP.35: 15 residues within 4Å: Chain B: H.264 Chain F: C.60, G.61, T.62, S.63, S.107, Q.108, S.109, T.112, V.159, A.160, S.161, K.245, E.248, K.363 18 PLIP interactions: 17 interactions with chain F, 1 interactions with chain B Hydrogen bonds: F:T.62, F:T.62, F:S.63, F:S.63, F:Q.108, F:S.109, F:T.112, F:T.112, F:V.159, F:S.161, F:K.245, F:K.245, B:H.264 Water bridges: F:S.63, F:Q.108, F:V.159, F:E.248, F:E.248

6 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.6: 5 residues within 4Å: Chain A: A.280, N.282, E.329, A.332 Ligands: NA.4 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.282, A:E.329 Water bridges: A:N.282, A:V.327, A:E.329 MES.12: 5 residues within 4Å: Chain B: A.280, N.282, E.329, A.332 Ligands: NA.10 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:N.282, B:E.329 Water bridges: B:N.282, B:V.327, B:E.329 MES.18: 5 residues within 4Å: Chain C: A.280, N.282, E.329, A.332 Ligands: NA.16 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:N.282, C:E.329 Water bridges: C:N.282, C:V.327, C:E.329 MES.24: 5 residues within 4Å: Chain D: A.280, N.282, E.329, A.332 Ligands: NA.22 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:N.282, D:E.329 Water bridges: D:N.282, D:V.327, D:E.329 MES.30: 5 residues within 4Å: Chain E: A.280, N.282, E.329, A.332 Ligands: NA.28 5 PLIP interactions: 5 interactions with chain E Hydrogen bonds: E:N.282, E:E.329 Water bridges: E:N.282, E:V.327, E:E.329 MES.36: 5 residues within 4Å: Chain F: A.280, N.282, E.329, A.332 Ligands: NA.34 5 PLIP interactions: 5 interactions with chain F Hydrogen bonds: F:N.282, F:E.329 Water bridges: F:N.282, F:V.327, F:E.329

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Teplyakov, A. et al., The mechanism of sugar phosphate isomerization by glucosamine 6-phosphate synthase. Protein Sci. (1999)

Release Date

1999-07-29

Peptides

GLUCOSAMINE 6-PHOSPHATE SYNTHASE: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

GLUCOSAMINE 6-PHOSPHATE SYNTHASE

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