SMTL ID : 1moy.3 (2 other biounits)

Streptavidin Mutant with Osteopontin Hexapeptide Insertion Including RGD

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

homo-dimer

Ligands

4 x MRD: (4R)-2-METHYLPENTANE-2,4-DIOL(Non-functional Binders)

MRD.1: 10 residues within 4Å: Chain A: N.11, L.13, Y.31, W.70, T.81, W.83, W.99, L.101, D.119 Ligands: MRD.2 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.13, A:T.81, A:W.83 Hydrogen bonds: A:N.11, A:Y.31, A:T.81, A:W.83 MRD.2: 8 residues within 4Å: Chain A: S.33, Y.42, W.70, R.75, A.77, S.79, L.101 Ligands: MRD.1 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:W.70, A:A.77 Hydrogen bonds: A:Y.42, A:S.79 Water bridges: A:S.33 MRD.3: 10 residues within 4Å: Chain B: N.11, L.13, Y.31, W.70, T.81, W.83, W.99, L.101, D.119 Ligands: MRD.4 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:L.13, B:T.81, B:W.83 Hydrogen bonds: B:N.11, B:T.81, B:T.81, B:W.83 MRD.4: 8 residues within 4Å: Chain B: S.33, Y.42, W.70, R.75, A.77, S.79, L.101 Ligands: MRD.3 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:W.70, B:A.77 Hydrogen bonds: B:Y.42, B:S.79 Water bridges: B:Y.42

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Le Trong, I. et al., Structural characterization and comparison of RGD cell-adhesion recognition sites engineered into streptavidin. Acta Crystallogr.,Sect.D (2003)

Release Date

2003-05-06

Peptides

Streptavidin: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Streptavidin

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