- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.90 Å
- Oligo State
- hetero-3-3-mer
- Ligands
- 7 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)(Non-functional Binders)
- 12 x NDG: 2-acetamido-2-deoxy-alpha-D-glucopyranose(Non-covalent)
NDG.2: 6 residues within 4Å:- Chain A: Q.80, N.81, E.119, F.120, R.150
- Ligands: NAG.3
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Q.80, A:N.81
NDG.5: 5 residues within 4Å:- Chain A: N.285, V.297, N.298
- Chain B: E.69
- Ligands: NDG.9
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:N.285, A:V.297, A:N.298
NDG.9: 2 residues within 4Å:- Chain A: K.299
- Ligands: NDG.5
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:K.299
NDG.10: 5 residues within 4Å:- Chain B: A.147, E.150, S.151, N.154, T.156
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:N.154, B:N.154, B:T.156
NDG.11: 3 residues within 4Å:- Chain C: N.38, T.318
- Chain D: L.52
5 PLIP interactions:4 interactions with chain C, 1 interactions with chain D- Hydrogen bonds: C:N.38, C:T.318, C:T.318, C:T.318
- Hydrophobic interactions: D:L.52
NDG.13: 4 residues within 4Å:- Chain A: S.219
- Chain C: N.165, T.167
- Ligands: NAG.6
4 PLIP interactions:3 interactions with chain A, 1 interactions with chain C- Hydrogen bonds: A:S.219, A:S.219, A:S.219, C:N.165
NDG.14: 4 residues within 4Å:- Chain C: P.221, W.222
- Ligands: MAN.15, NAG.23
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:W.222
NDG.17: 4 residues within 4Å:- Chain D: E.150, S.151, N.154, T.156
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:N.154, D:T.156
NDG.18: 4 residues within 4Å:- Chain E: P.221, W.222
- Ligands: NAG.4, MAN.19
1 PLIP interactions:1 interactions with chain E- Hydrogen bonds: E:W.222
NDG.21: 4 residues within 4Å:- Chain E: T.24, N.38, A.39, K.315
3 PLIP interactions:3 interactions with chain E- Hydrogen bonds: E:T.24, E:N.38, E:A.39
NDG.22: 5 residues within 4Å:- Chain E: Q.80, N.81, E.119, F.120, R.150
2 PLIP interactions:2 interactions with chain E- Hydrogen bonds: E:N.81, E:F.120
NDG.24: 4 residues within 4Å:- Chain E: N.285, V.297, N.298
- Chain F: E.69
5 PLIP interactions:4 interactions with chain E, 1 interactions with chain F- Hydrophobic interactions: E:V.297
- Hydrogen bonds: E:N.285, E:V.297, E:N.298, F:E.69
- 6 x MAN: alpha-D-mannopyranose(Non-covalent)(Non-functional Binders)
MAN.7: 3 residues within 4Å:- Chain A: W.222
- Ligands: NAG.6, MAN.8
No protein-ligand interaction detected (PLIP)MAN.8: 1 residues within 4Å:- Ligands: MAN.7
No protein-ligand interaction detected (PLIP)MAN.15: 2 residues within 4Å:- Ligands: NDG.14, MAN.16
No protein-ligand interaction detected (PLIP)MAN.16: 1 residues within 4Å:- Ligands: MAN.15
No protein-ligand interaction detected (PLIP)MAN.19: 3 residues within 4Å:- Chain E: W.222
- Ligands: NDG.18, MAN.20
No protein-ligand interaction detected (PLIP)MAN.20: 1 residues within 4Å:- Ligands: MAN.19
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ha, Y. et al., X-ray structure of the hemagglutinin of a potential H3 avian progenitor of the 1968 Hong Kong pandemic influenza virus. Virology (2003)
- Release Date
- 2003-08-26
- Peptides
- Hemagglutinin HA1 chain: ACE
Hemagglutinin HA2 chain: BDF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
DE
GB
BD
EF
H
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.90 Å
- Oligo State
- hetero-3-3-mer
- Ligands
- 7 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)(Non-functional Binders)
- 12 x NDG: 2-acetamido-2-deoxy-alpha-D-glucopyranose(Non-covalent)
- 6 x MAN: alpha-D-mannopyranose(Non-covalent)(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ha, Y. et al., X-ray structure of the hemagglutinin of a potential H3 avian progenitor of the 1968 Hong Kong pandemic influenza virus. Virology (2003)
- Release Date
- 2003-08-26
- Peptides
- Hemagglutinin HA1 chain: ACE
Hemagglutinin HA2 chain: BDF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
DE
GB
BD
EF
H