SMTL ID : 1mu9.1 (1 other biounit)

Crystal Structure of a Human Tyrosyl-DNA Phosphodiesterase (Tdp1)-Vanadate Complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

monomer

Ligands

1 x VO4: VANADATE ION(Non-covalent)

VO4.1: 8 residues within 4Å: Chain A: H.140, K.142, N.160, S.276, H.370, K.372, N.393 Ligands: GOL.2 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:K.142, A:N.160, A:S.276, A:H.370, A:K.372, A:N.393

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 8 residues within 4Å: Chain A: Y.81, H.140, N.160, G.335, S.336, P.338, H.370 Ligands: VO4.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.160, A:G.335

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Davies, D.R. et al., Insights Into Substrate Binding and Catalytic Mechanism of Human Tyrosyl-DNA Phosphodiesterase (Tdp1) from Vanadate- and Tungstate-Inhibited Structures. J.Mol.Biol. (2002)

Release Date

2003-01-07

Peptides

Tyrosyl-DNA Phosphodiesterase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Tyrosyl-DNA Phosphodiesterase

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