SMTL ID : 1n1g.1

Crystal structure of Leishmania mexicana Glycerol-3-phosphate dehydrogenase with inhibitor BCP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

6 x BCP: 2-BROMO-6-CHLORO-PURINE(Non-covalent)

BCP.1: 3 residues within 4Å: Chain B: D.189, S.191 Ligands: BCP.2 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.189 BCP.2: 7 residues within 4Å: Chain A: L.223, M.225, R.336, L.339 Chain B: F.165, R.190 Ligands: BCP.1 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Water bridges: B:F.165 Halogen bonds: B:R.190 Hydrogen bonds: A:R.336 BCP.3: 4 residues within 4Å: Chain A: W.44, M.46, I.93, F.97 2 PLIP interactions: 2 interactions with chain A pi-Stacking: A:F.97, A:F.97 BCP.5: 3 residues within 4Å: Chain A: D.189, S.191 Ligands: BCP.6 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.189 BCP.6: 7 residues within 4Å: Chain A: F.165, R.190 Chain B: L.223, M.225, R.336, L.339 Ligands: BCP.5 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:R.336 Water bridges: A:F.165 Halogen bonds: A:R.190 BCP.7: 4 residues within 4Å: Chain B: W.44, M.46, I.93, F.97 2 PLIP interactions: 2 interactions with chain B pi-Stacking: B:F.97, B:F.97

2 x PLM: PALMITIC ACID(Non-covalent)

PLM.4: 14 residues within 4Å: Chain A: G.216, V.219, A.220, A.229, L.233, Q.324, I.325, I.328, L.339, L.342, C.345, Q.348 Chain B: F.165, W.195 12 PLIP interactions: 9 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:V.219, A:A.220, A:L.233, A:L.233, A:Q.324, A:I.325, A:I.328, A:L.339, B:F.165, B:W.195, B:W.195 Water bridges: A:R.236 PLM.8: 14 residues within 4Å: Chain A: F.165, W.195 Chain B: G.216, V.219, A.220, A.229, L.233, Q.324, I.325, I.328, L.339, L.342, C.345, Q.348 12 PLIP interactions: 9 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:V.219, B:A.220, B:L.233, B:L.233, B:Q.324, B:I.325, B:I.328, B:L.339, A:F.165, A:W.195, A:W.195 Water bridges: B:R.236

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Choe, J. et al., Anomalous differences of light elements in determining precise binding modes of ligands to glycerol-3-phosphate dehydrogenase. Chem.Biol. (2002)

Release Date

2003-10-28

Peptides

glycerol-3-phosphate dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

glycerol-3-phosphate dehydrogenase

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