SMTL ID : 1n4s.4 (5 other biounits)

Protein Geranylgeranyltransferase type-I Complexed with GGPP and a Geranylgeranylated KKKSKTKCVIL Peptide Product

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-oligomer

Ligands

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 4 residues within 4Å: Chain A: R.253, R.287, R.291, Y.292 Ligand excluded by PLIP CL.3: 4 residues within 4Å: Chain B: K.284, I.285, F.286, Q.287 Ligand excluded by PLIP

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 3 residues within 4Å: Chain B: D.269, C.271, H.321 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.269, B:D.269, B:C.271, B:H.321, H2O.6

1 x GRG: GERANYLGERANYL DIPHOSPHATE(Non-covalent)

GRG.4: 20 residues within 4Å: Chain A: K.164, Y.166, Y.200 Chain B: T.49, F.52, F.53, Y.126, T.127, R.173, Y.176, Q.212, H.219, G.221, C.225, R.263, K.266, Y.272, W.275, N.345 Chain C: I.10 21 PLIP interactions: 18 interactions with chain B, 2 interactions with chain A, 1 interactions with chain C Hydrophobic interactions: B:F.52, B:F.53, B:F.53, B:Y.126, B:T.127, B:R.173, B:R.173, B:Y.176, B:W.275, A:Y.200, C:I.10 Hydrogen bonds: B:Y.272 Water bridges: B:G.262, B:R.263, B:K.311 Salt bridges: B:H.219, B:R.263, B:R.263, B:K.266, B:K.266, A:K.164

1 x GER: GERAN-8-YL GERAN(Non-covalent)

GER.5: 13 residues within 4Å: Chain B: R.31, Y.40, L.43, I.50, F.53, H.316, P.317, D.318, A.319, L.320 Chain C: C.8, V.9, I.10 5 PLIP interactions: 2 interactions with chain C, 3 interactions with chain B Hydrophobic interactions: C:V.9, C:I.10, B:F.53, B:A.319, B:L.320

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Taylor, J.S. et al., Structure of mammalian protein geranylgeranyltransferase type-I. EMBO J. (2003)

Release Date

2003-11-18

Peptides

Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha: A
Geranylgeranyl transferase type-1 subunit beta: B
Fusion protein consisting of transforming protein p21b and Ras related protein Rap-2b: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

B
H

C
P

Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha

Geranylgeranyl transferase type-1 subunit beta

Fusion protein consisting of transforming protein p21b and Ras related protein Rap-2b

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