SMTL ID : 1n6m.2 (1 other biounit)

Rotation of the stalk/neck and one head in a new crystal structure of the kinesin motor protein, Ncd

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-tetramer

Ligands

4 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 2 residues within 4Å: Chain A: T.150 Ligands: ADP.2 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:T.150 MG.3: 3 residues within 4Å: Chain B: T.150, S.259 Ligands: ADP.4 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:T.150 MG.5: 2 residues within 4Å: Chain C: T.150 Ligands: ADP.6 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:T.150 MG.7: 3 residues within 4Å: Chain D: T.150, S.259 Ligands: ADP.8 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:T.150

4 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.2: 12 residues within 4Å: Chain A: R.63, R.65, P.66, Q.144, T.145, G.146, S.147, G.148, K.149, T.150, Y.151 Ligands: MG.1 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:Q.144, A:G.146, A:S.147, A:G.148, A:G.148, A:K.149, A:T.150, A:Y.151 Salt bridges: A:K.149 pi-Stacking: A:Y.151, A:Y.151 ADP.4: 13 residues within 4Å: Chain B: R.63, R.65, P.66, L.68, Q.144, T.145, G.146, S.147, G.148, K.149, T.150, Y.151 Ligands: MG.3 15 PLIP interactions: 15 interactions with chain B Hydrogen bonds: B:R.63, B:Q.144, B:G.146, B:S.147, B:G.148, B:K.149, B:T.150, B:T.150, B:Y.151 Water bridges: B:R.63, B:R.63 Salt bridges: B:K.149, B:K.149 pi-Stacking: B:Y.151, B:Y.151 ADP.6: 12 residues within 4Å: Chain C: R.63, R.65, P.66, Q.144, T.145, G.146, S.147, G.148, K.149, T.150, Y.151 Ligands: MG.5 11 PLIP interactions: 11 interactions with chain C Hydrogen bonds: C:Q.144, C:G.146, C:S.147, C:G.148, C:G.148, C:K.149, C:T.150, C:Y.151 Salt bridges: C:K.149 pi-Stacking: C:Y.151, C:Y.151 ADP.8: 13 residues within 4Å: Chain D: R.63, R.65, P.66, L.68, Q.144, T.145, G.146, S.147, G.148, K.149, T.150, Y.151 Ligands: MG.7 16 PLIP interactions: 16 interactions with chain D Hydrogen bonds: D:R.63, D:Q.144, D:G.146, D:S.147, D:G.148, D:K.149, D:T.150, D:T.150, D:T.150, D:Y.151 Water bridges: D:R.63, D:R.63 Salt bridges: D:K.149, D:K.149 pi-Stacking: D:Y.151, D:Y.151

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yun, M. et al., Rotation of the stalk/neck and one head in a new crystal structure of the kinesin motor protein, Ncd. EMBO J. (2003)

Release Date

2003-10-28

Peptides

Claret segregational protein: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Claret segregational protein

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