SMTL ID : 1ndd.5 (4 other biounits)

STRUCTURE OF NEDD8

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-tetramer

Ligands

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 4 residues within 4Å: Chain A: V.70, L.71 Chain D: V.70, L.71 Ligand excluded by PLIP CL.2: 4 residues within 4Å: Chain B: V.70, L.71 Chain C: V.70, L.71 Ligand excluded by PLIP

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 4 residues within 4Å: Chain A: S.46, G.47 Chain C: N.51, K.54 4 PLIP interactions: 2 interactions with chain C, 2 interactions with chain A Hydrogen bonds: C:N.51, A:S.46, A:G.47 Salt bridges: C:K.54 SO4.4: 3 residues within 4Å: Chain C: K.27, Q.41, R.42 8 PLIP interactions: 8 interactions with chain C Water bridges: C:K.27, C:K.27, C:K.27, C:Q.41, C:D.52, C:D.52 Salt bridges: C:K.27, C:R.42 SO4.5: 4 residues within 4Å: Chain A: K.48, Q.49 Chain C: K.48, K.60 9 PLIP interactions: 5 interactions with chain A, 4 interactions with chain C Hydrogen bonds: A:Q.49 Water bridges: A:K.48, A:K.48, A:Q.49, C:S.46, C:S.46 Salt bridges: A:K.48, C:K.48, C:K.60 SO4.6: 5 residues within 4Å: Chain D: K.27, Q.41, R.42, Q.49, M.50 7 PLIP interactions: 7 interactions with chain D Hydrogen bonds: D:Q.41, D:Q.49 Water bridges: D:K.27, D:M.50, D:M.50 Salt bridges: D:K.27, D:R.42

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Whitby, F.G. et al., Crystal structure of the human ubiquitin-like protein NEDD8 and interactions with ubiquitin pathway enzymes. J.Biol.Chem. (1998)

Release Date

1999-02-23

Peptides

PROTEIN (UBIQUITIN-LIKE PROTEIN NEDD8): ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

PROTEIN (UBIQUITIN-LIKE PROTEIN NEDD8)

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