SMTL ID : 1nf4.2 (2 other biounits)

X-Ray Structure of the Desulfovibrio desulfuricans bacterioferritin: the diiron site in different states (reduced structure)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

homo-24-mer

Ligands

48 x FE2: FE (II) ION(Non-covalent)

FE2.1: 4 residues within 4Å: Chain A: E.23, E.56, H.59, E.132 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.23, A:E.56, A:H.59, A:E.132, H2O.4 FE2.2: 4 residues within 4Å: Chain A: E.56, E.99, E.132, H.135 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.56, A:E.99, A:E.99, A:E.132, A:H.135 FE2.8: 4 residues within 4Å: Chain B: E.23, E.56, H.59, E.132 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.23, B:E.56, B:H.59, B:E.132, H2O.8 FE2.9: 4 residues within 4Å: Chain B: E.56, E.99, E.132, H.135 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.56, B:E.99, B:E.132, B:H.135, H2O.9 FE2.14: 4 residues within 4Å: Chain C: E.23, E.56, H.59, E.132 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:E.23, C:E.56, C:H.59, C:E.132, H2O.12 FE2.15: 4 residues within 4Å: Chain C: E.56, E.99, E.132, H.135 5 PLIP interactions: 5 interactions with chain C Metal complexes: C:E.56, C:E.99, C:E.99, C:E.132, C:H.135 FE2.20: 4 residues within 4Å: Chain D: E.23, E.56, H.59, E.132 5 PLIP interactions: 4 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:E.23, D:E.56, D:H.59, D:E.132, H2O.16 FE2.21: 4 residues within 4Å: Chain D: E.56, E.99, E.132, H.135 5 PLIP interactions: 5 interactions with chain D Metal complexes: D:E.56, D:E.99, D:E.99, D:E.132, D:H.135 FE2.27: 5 residues within 4Å: Chain E: E.23, E.56, H.59, E.132 Ligands: FE2.28 5 PLIP interactions: 4 interactions with chain E, 1 Ligand-Water interactions Metal complexes: E:E.23, E:E.23, E:H.59, E:E.132, H2O.21 FE2.28: 5 residues within 4Å: Chain E: E.56, E.99, E.132, H.135 Ligands: FE2.27 5 PLIP interactions: 5 interactions with chain E Metal complexes: E:E.56, E:E.99, E:E.99, E:E.132, E:H.135 FE2.34: 5 residues within 4Å: Chain F: E.23, E.56, H.59, E.132 Ligands: FE2.35 5 PLIP interactions: 4 interactions with chain F, 1 Ligand-Water interactions Metal complexes: F:E.23, F:E.56, F:H.59, F:E.132, H2O.24 FE2.35: 5 residues within 4Å: Chain F: E.56, E.99, E.132, H.135 Ligands: FE2.34 5 PLIP interactions: 5 interactions with chain F Metal complexes: F:E.56, F:E.99, F:E.99, F:E.132, F:H.135 FE2.39: 5 residues within 4Å: Chain G: E.23, E.56, H.59, E.132 Ligands: FE2.40 5 PLIP interactions: 4 interactions with chain G, 1 Ligand-Water interactions Metal complexes: G:E.23, G:E.56, G:H.59, G:E.132, H2O.26 FE2.40: 5 residues within 4Å: Chain G: E.56, E.99, E.132, H.135 Ligands: FE2.39 5 PLIP interactions: 5 interactions with chain G Metal complexes: G:E.56, G:E.99, G:E.99, G:E.132, G:H.135 FE2.46: 4 residues within 4Å: Chain H: E.23, E.56, H.59, E.132 5 PLIP interactions: 4 interactions with chain H, 1 Ligand-Water interactions Metal complexes: H:E.23, H:E.56, H:H.59, H:E.132, H2O.31 FE2.47: 4 residues within 4Å: Chain H: E.56, E.99, E.132, H.135 5 PLIP interactions: 4 interactions with chain H, 1 Ligand-Water interactions Metal complexes: H:E.56, H:E.99, H:E.132, H:H.135, H2O.34 FE2.51: 4 residues within 4Å: Chain I: E.23, E.56, H.59, E.132 5 PLIP interactions: 4 interactions with chain I, 1 Ligand-Water interactions Metal complexes: I:E.23, I:E.56, I:H.59, I:E.132, H2O.38 FE2.52: 4 residues within 4Å: Chain I: E.56, E.99, E.132, H.135 5 PLIP interactions: 5 interactions with chain I Metal complexes: I:E.56, I:E.99, I:E.99, I:E.132, I:H.135 FE2.58: 4 residues within 4Å: Chain J: E.23, E.56, H.59, E.132 5 PLIP interactions: 4 interactions with chain J, 1 Ligand-Water interactions Metal complexes: J:E.23, J:E.56, J:H.59, J:E.132, H2O.42 FE2.59: 4 residues within 4Å: Chain J: E.56, E.99, E.132, H.135 5 PLIP interactions: 4 interactions with chain J, 1 Ligand-Water interactions Metal complexes: J:E.56, J:E.99, J:E.132, J:H.135, H2O.43 FE2.64: 4 residues within 4Å: Chain K: E.23, E.56, H.59, E.132 5 PLIP interactions: 4 interactions with chain K, 1 Ligand-Water interactions Metal complexes: K:E.23, K:E.56, K:H.59, K:E.132, H2O.46 FE2.65: 4 residues within 4Å: Chain K: E.56, E.99, E.132, H.135 5 PLIP interactions: 5 interactions with chain K Metal complexes: K:E.56, K:E.99, K:E.99, K:E.132, K:H.135 FE2.70: 4 residues within 4Å: Chain L: E.23, E.56, H.59, E.132 5 PLIP interactions: 4 interactions with chain L, 1 Ligand-Water interactions Metal complexes: L:E.23, L:E.56, L:H.59, L:E.132, H2O.50 FE2.71: 4 residues within 4Å: Chain L: E.56, E.99, E.132, H.135 5 PLIP interactions: 5 interactions with chain L Metal complexes: L:E.56, L:E.99, L:E.99, L:E.132, L:H.135 FE2.77: 5 residues within 4Å: Chain M: E.23, E.56, H.59, E.132 Ligands: FE2.78 5 PLIP interactions: 4 interactions with chain M, 1 Ligand-Water interactions Metal complexes: M:E.23, M:E.23, M:H.59, M:E.132, H2O.54 FE2.78: 5 residues within 4Å: Chain M: E.56, E.99, E.132, H.135 Ligands: FE2.77 5 PLIP interactions: 5 interactions with chain M Metal complexes: M:E.56, M:E.99, M:E.99, M:E.132, M:H.135 FE2.84: 5 residues within 4Å: Chain N: E.23, E.56, H.59, E.132 Ligands: FE2.85 5 PLIP interactions: 4 interactions with chain N, 1 Ligand-Water interactions Metal complexes: N:E.23, N:E.56, N:H.59, N:E.132, H2O.58 FE2.85: 5 residues within 4Å: Chain N: E.56, E.99, E.132, H.135 Ligands: FE2.84 5 PLIP interactions: 5 interactions with chain N Metal complexes: N:E.56, N:E.99, N:E.99, N:E.132, N:H.135 FE2.89: 5 residues within 4Å: Chain O: E.23, E.56, H.59, E.132 Ligands: FE2.90 5 PLIP interactions: 4 interactions with chain O, 1 Ligand-Water interactions Metal complexes: O:E.23, O:E.56, O:H.59, O:E.132, H2O.60 FE2.90: 5 residues within 4Å: Chain O: E.56, E.99, E.132, H.135 Ligands: FE2.89 5 PLIP interactions: 5 interactions with chain O Metal complexes: O:E.56, O:E.99, O:E.99, O:E.132, O:H.135 FE2.96: 4 residues within 4Å: Chain P: E.23, E.56, H.59, E.132 5 PLIP interactions: 4 interactions with chain P, 1 Ligand-Water interactions Metal complexes: P:E.23, P:E.56, P:H.59, P:E.132, H2O.64 FE2.97: 4 residues within 4Å: Chain P: E.56, E.99, E.132, H.135 5 PLIP interactions: 4 interactions with chain P, 1 Ligand-Water interactions Metal complexes: P:E.56, P:E.99, P:E.132, P:H.135, H2O.68 FE2.101: 4 residues within 4Å: Chain Q: E.23, E.56, H.59, E.132 5 PLIP interactions: 4 interactions with chain Q, 1 Ligand-Water interactions Metal complexes: Q:E.23, Q:E.56, Q:H.59, Q:E.132, H2O.71 FE2.102: 4 residues within 4Å: Chain Q: E.56, E.99, E.132, H.135 5 PLIP interactions: 5 interactions with chain Q Metal complexes: Q:E.56, Q:E.99, Q:E.99, Q:E.132, Q:H.135 FE2.108: 4 residues within 4Å: Chain R: E.23, E.56, H.59, E.132 5 PLIP interactions: 4 interactions with chain R, 1 Ligand-Water interactions Metal complexes: R:E.23, R:E.56, R:H.59, R:E.132, H2O.76 FE2.109: 4 residues within 4Å: Chain R: E.56, E.99, E.132, H.135 5 PLIP interactions: 4 interactions with chain R, 1 Ligand-Water interactions Metal complexes: R:E.56, R:E.99, R:E.132, R:H.135, H2O.77 FE2.114: 4 residues within 4Å: Chain S: E.23, E.56, H.59, E.132 5 PLIP interactions: 4 interactions with chain S, 1 Ligand-Water interactions Metal complexes: S:E.23, S:E.56, S:H.59, S:E.132, H2O.80 FE2.115: 4 residues within 4Å: Chain S: E.56, E.99, E.132, H.135 5 PLIP interactions: 5 interactions with chain S Metal complexes: S:E.56, S:E.99, S:E.99, S:E.132, S:H.135 FE2.120: 4 residues within 4Å: Chain T: E.23, E.56, H.59, E.132 5 PLIP interactions: 4 interactions with chain T, 1 Ligand-Water interactions Metal complexes: T:E.23, T:E.56, T:H.59, T:E.132, H2O.84 FE2.121: 4 residues within 4Å: Chain T: E.56, E.99, E.132, H.135 5 PLIP interactions: 5 interactions with chain T Metal complexes: T:E.56, T:E.99, T:E.99, T:E.132, T:H.135 FE2.127: 5 residues within 4Å: Chain U: E.23, E.56, H.59, E.132 Ligands: FE2.128 5 PLIP interactions: 4 interactions with chain U, 1 Ligand-Water interactions Metal complexes: U:E.23, U:E.23, U:H.59, U:E.132, H2O.88 FE2.128: 5 residues within 4Å: Chain U: E.56, E.99, E.132, H.135 Ligands: FE2.127 5 PLIP interactions: 5 interactions with chain U Metal complexes: U:E.56, U:E.99, U:E.99, U:E.132, U:H.135 FE2.134: 5 residues within 4Å: Chain V: E.23, E.56, H.59, E.132 Ligands: FE2.135 5 PLIP interactions: 4 interactions with chain V, 1 Ligand-Water interactions Metal complexes: V:E.23, V:E.56, V:H.59, V:E.132, H2O.92 FE2.135: 5 residues within 4Å: Chain V: E.56, E.99, E.132, H.135 Ligands: FE2.134 5 PLIP interactions: 5 interactions with chain V Metal complexes: V:E.56, V:E.99, V:E.99, V:E.132, V:H.135 FE2.139: 5 residues within 4Å: Chain W: E.23, E.56, H.59, E.132 Ligands: FE2.140 5 PLIP interactions: 4 interactions with chain W, 1 Ligand-Water interactions Metal complexes: W:E.23, W:E.56, W:H.59, W:E.132, H2O.93 FE2.140: 5 residues within 4Å: Chain W: E.56, E.99, E.132, H.135 Ligands: FE2.139 5 PLIP interactions: 5 interactions with chain W Metal complexes: W:E.56, W:E.99, W:E.99, W:E.132, W:H.135 FE2.146: 4 residues within 4Å: Chain X: E.23, E.56, H.59, E.132 5 PLIP interactions: 4 interactions with chain X, 1 Ligand-Water interactions Metal complexes: X:E.23, X:E.56, X:H.59, X:E.132, H2O.98 FE2.147: 4 residues within 4Å: Chain X: E.56, E.99, E.132, H.135 5 PLIP interactions: 4 interactions with chain X, 1 Ligand-Water interactions Metal complexes: X:E.56, X:E.99, X:E.132, X:H.135, H2O.102

90 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 5 residues within 4Å: Chain A: K.50, S.162, S.163, T.164, G.165 Ligand excluded by PLIP SO4.4: 2 residues within 4Å: Chain A: S.144, N.148 Ligand excluded by PLIP SO4.5: 3 residues within 4Å: Chain A: P.161, S.162, S.163 Ligand excluded by PLIP SO4.7: 6 residues within 4Å: Chain A: T.76, Q.77 Chain B: K.78, G.80, K.81, V.82 Ligand excluded by PLIP SO4.10: 4 residues within 4Å: Chain B: K.50, S.163, T.164 Ligands: FEC.6 Ligand excluded by PLIP SO4.11: 2 residues within 4Å: Chain B: S.144, N.148 Ligand excluded by PLIP SO4.12: 3 residues within 4Å: Chain B: K.114 Chain C: K.114 Chain H: K.114 Ligand excluded by PLIP SO4.13: 3 residues within 4Å: Chain B: P.161, S.162, S.163 Ligand excluded by PLIP SO4.16: 4 residues within 4Å: Chain C: K.50, S.162, S.163, T.164 Ligand excluded by PLIP SO4.17: 2 residues within 4Å: Chain C: S.144, N.148 Ligand excluded by PLIP SO4.18: 3 residues within 4Å: Chain C: P.161, S.162, S.163 Ligand excluded by PLIP SO4.22: 6 residues within 4Å: Chain D: K.50, S.162, S.163, T.164, G.165 Ligands: FEC.19 Ligand excluded by PLIP SO4.23: 2 residues within 4Å: Chain D: N.4, R.5 Ligand excluded by PLIP SO4.24: 2 residues within 4Å: Chain D: S.144, N.148 Ligand excluded by PLIP SO4.25: 3 residues within 4Å: Chain D: P.161, S.162, S.163 Ligand excluded by PLIP SO4.26: 3 residues within 4Å: Chain D: K.114 Chain E: K.114 Chain W: K.114 Ligand excluded by PLIP SO4.29: 3 residues within 4Å: Chain E: K.50, T.164, G.165 Ligand excluded by PLIP SO4.30: 2 residues within 4Å: Chain E: N.4, R.5 Ligand excluded by PLIP SO4.31: 3 residues within 4Å: Chain E: S.144, K.147, N.148 Ligand excluded by PLIP SO4.32: 3 residues within 4Å: Chain E: P.161, S.162, S.163 Ligand excluded by PLIP SO4.36: 5 residues within 4Å: Chain F: K.50, S.163, T.164, G.165 Ligands: FEC.33 Ligand excluded by PLIP SO4.37: 5 residues within 4Å: Chain F: K.114 Chain N: K.114 Chain V: K.114 Ligands: SO4.87, SO4.137 Ligand excluded by PLIP SO4.38: 3 residues within 4Å: Chain F: P.161, S.162, S.163 Ligand excluded by PLIP SO4.41: 5 residues within 4Å: Chain G: K.50, S.162, S.163, T.164, G.165 Ligand excluded by PLIP SO4.42: 3 residues within 4Å: Chain G: N.4, R.5, E.6 Ligand excluded by PLIP SO4.43: 3 residues within 4Å: Chain G: S.144, K.147, N.148 Ligand excluded by PLIP SO4.44: 3 residues within 4Å: Chain G: P.161, S.162, S.163 Ligand excluded by PLIP SO4.48: 5 residues within 4Å: Chain H: K.50, S.162, S.163, T.164, G.165 Ligand excluded by PLIP SO4.49: 2 residues within 4Å: Chain H: S.144, N.148 Ligand excluded by PLIP SO4.50: 3 residues within 4Å: Chain H: P.161, S.162, S.163 Ligand excluded by PLIP SO4.53: 5 residues within 4Å: Chain I: K.50, S.162, S.163, T.164, G.165 Ligand excluded by PLIP SO4.54: 2 residues within 4Å: Chain I: S.144, N.148 Ligand excluded by PLIP SO4.55: 3 residues within 4Å: Chain I: P.161, S.162, S.163 Ligand excluded by PLIP SO4.57: 6 residues within 4Å: Chain I: T.76, Q.77 Chain J: K.78, G.80, K.81, V.82 Ligand excluded by PLIP SO4.60: 4 residues within 4Å: Chain J: K.50, S.163, T.164 Ligands: FEC.56 Ligand excluded by PLIP SO4.61: 2 residues within 4Å: Chain J: S.144, N.148 Ligand excluded by PLIP SO4.62: 3 residues within 4Å: Chain J: K.114 Chain K: K.114 Chain P: K.114 Ligand excluded by PLIP SO4.63: 3 residues within 4Å: Chain J: P.161, S.162, S.163 Ligand excluded by PLIP SO4.66: 4 residues within 4Å: Chain K: K.50, S.162, S.163, T.164 Ligand excluded by PLIP SO4.67: 2 residues within 4Å: Chain K: S.144, N.148 Ligand excluded by PLIP SO4.68: 3 residues within 4Å: Chain K: P.161, S.162, S.163 Ligand excluded by PLIP SO4.72: 6 residues within 4Å: Chain L: K.50, S.162, S.163, T.164, G.165 Ligands: FEC.69 Ligand excluded by PLIP SO4.73: 2 residues within 4Å: Chain L: N.4, R.5 Ligand excluded by PLIP SO4.74: 2 residues within 4Å: Chain L: S.144, N.148 Ligand excluded by PLIP SO4.75: 3 residues within 4Å: Chain L: P.161, S.162, S.163 Ligand excluded by PLIP SO4.76: 3 residues within 4Å: Chain G: K.114 Chain L: K.114 Chain M: K.114 Ligand excluded by PLIP SO4.79: 3 residues within 4Å: Chain M: K.50, T.164, G.165 Ligand excluded by PLIP SO4.80: 2 residues within 4Å: Chain M: N.4, R.5 Ligand excluded by PLIP SO4.81: 3 residues within 4Å: Chain M: S.144, K.147, N.148 Ligand excluded by PLIP SO4.82: 3 residues within 4Å: Chain M: P.161, S.162, S.163 Ligand excluded by PLIP SO4.86: 5 residues within 4Å: Chain N: K.50, S.163, T.164, G.165 Ligands: FEC.83 Ligand excluded by PLIP SO4.87: 5 residues within 4Å: Chain F: K.114 Chain N: K.114 Chain V: K.114 Ligands: SO4.37, SO4.137 Ligand excluded by PLIP SO4.88: 3 residues within 4Å: Chain N: P.161, S.162, S.163 Ligand excluded by PLIP SO4.91: 5 residues within 4Å: Chain O: K.50, S.162, S.163, T.164, G.165 Ligand excluded by PLIP SO4.92: 3 residues within 4Å: Chain O: N.4, R.5, E.6 Ligand excluded by PLIP SO4.93: 3 residues within 4Å: Chain O: S.144, K.147, N.148 Ligand excluded by PLIP SO4.94: 3 residues within 4Å: Chain O: P.161, S.162, S.163 Ligand excluded by PLIP SO4.98: 5 residues within 4Å: Chain P: K.50, S.162, S.163, T.164, G.165 Ligand excluded by PLIP SO4.99: 2 residues within 4Å: Chain P: S.144, N.148 Ligand excluded by PLIP SO4.100: 3 residues within 4Å: Chain P: P.161, S.162, S.163 Ligand excluded by PLIP SO4.103: 5 residues within 4Å: Chain Q: K.50, S.162, S.163, T.164, G.165 Ligand excluded by PLIP SO4.104: 2 residues within 4Å: Chain Q: S.144, N.148 Ligand excluded by PLIP SO4.105: 3 residues within 4Å: Chain Q: P.161, S.162, S.163 Ligand excluded by PLIP SO4.107: 6 residues within 4Å: Chain Q: T.76, Q.77 Chain R: K.78, G.80, K.81, V.82 Ligand excluded by PLIP SO4.110: 4 residues within 4Å: Chain R: K.50, S.163, T.164 Ligands: FEC.106 Ligand excluded by PLIP SO4.111: 2 residues within 4Å: Chain R: S.144, N.148 Ligand excluded by PLIP SO4.112: 3 residues within 4Å: Chain R: K.114 Chain S: K.114 Chain X: K.114 Ligand excluded by PLIP SO4.113: 3 residues within 4Å: Chain R: P.161, S.162, S.163 Ligand excluded by PLIP SO4.116: 4 residues within 4Å: Chain S: K.50, S.162, S.163, T.164 Ligand excluded by PLIP SO4.117: 2 residues within 4Å: Chain S: S.144, N.148 Ligand excluded by PLIP SO4.118: 3 residues within 4Å: Chain S: P.161, S.162, S.163 Ligand excluded by PLIP SO4.122: 6 residues within 4Å: Chain T: K.50, S.162, S.163, T.164, G.165 Ligands: FEC.119 Ligand excluded by PLIP SO4.123: 2 residues within 4Å: Chain T: N.4, R.5 Ligand excluded by PLIP SO4.124: 2 residues within 4Å: Chain T: S.144, N.148 Ligand excluded by PLIP SO4.125: 3 residues within 4Å: Chain T: P.161, S.162, S.163 Ligand excluded by PLIP SO4.126: 3 residues within 4Å: Chain O: K.114 Chain T: K.114 Chain U: K.114 Ligand excluded by PLIP SO4.129: 3 residues within 4Å: Chain U: K.50, T.164, G.165 Ligand excluded by PLIP SO4.130: 2 residues within 4Å: Chain U: N.4, R.5 Ligand excluded by PLIP SO4.131: 3 residues within 4Å: Chain U: S.144, K.147, N.148 Ligand excluded by PLIP SO4.132: 3 residues within 4Å: Chain U: P.161, S.162, S.163 Ligand excluded by PLIP SO4.136: 5 residues within 4Å: Chain V: K.50, S.163, T.164, G.165 Ligands: FEC.133 Ligand excluded by PLIP SO4.137: 5 residues within 4Å: Chain F: K.114 Chain N: K.114 Chain V: K.114 Ligands: SO4.37, SO4.87 Ligand excluded by PLIP SO4.138: 3 residues within 4Å: Chain V: P.161, S.162, S.163 Ligand excluded by PLIP SO4.141: 5 residues within 4Å: Chain W: K.50, S.162, S.163, T.164, G.165 Ligand excluded by PLIP SO4.142: 3 residues within 4Å: Chain W: N.4, R.5, E.6 Ligand excluded by PLIP SO4.143: 3 residues within 4Å: Chain W: S.144, K.147, N.148 Ligand excluded by PLIP SO4.144: 3 residues within 4Å: Chain W: P.161, S.162, S.163 Ligand excluded by PLIP SO4.148: 5 residues within 4Å: Chain X: K.50, S.162, S.163, T.164, G.165 Ligand excluded by PLIP SO4.149: 2 residues within 4Å: Chain X: S.144, N.148 Ligand excluded by PLIP SO4.150: 3 residues within 4Å: Chain X: P.161, S.162, S.163 Ligand excluded by PLIP

12 x FEC: 1,3,5,8-TETRAMETHYL-PORPHINE-2,4,6,7-TETRAPROPIONIC ACID FERROUS COMPLEX(Non-covalent)

FEC.6: 20 residues within 4Å: Chain A: R.20, L.24, H.28, M.31, Y.35, K.50, M.57, E.61, S.168 Chain B: R.20, I.27, H.28, M.31, Y.35, K.50, M.57, E.61, A.167, S.168 Ligands: SO4.10 17 PLIP interactions: 10 interactions with chain B, 7 interactions with chain A, Hydrophobic interactions: B:I.27, B:M.31, B:E.61, A:L.24, A:E.61 Hydrogen bonds: B:Y.35, B:S.168, B:S.168, A:Y.35, A:Y.35 Water bridges: B:R.20, B:K.169, A:R.20 Salt bridges: B:R.20, B:K.50, A:R.20, A:H.28 FEC.19: 21 residues within 4Å: Chain C: R.20, L.24, I.27, H.28, M.31, Y.35, K.50, M.57, E.61 Chain D: R.20, I.27, H.28, M.31, Y.35, K.50, M.57, E.61, A.167, S.168, K.169 Ligands: SO4.22 17 PLIP interactions: 9 interactions with chain C, 8 interactions with chain D, Hydrophobic interactions: C:L.24, C:I.27, C:M.31, C:M.57, C:E.61, D:E.61 Hydrogen bonds: C:Y.35, C:Y.35, D:Y.35, D:S.168, D:S.168, D:K.169 Salt bridges: C:R.20, C:H.28, D:R.20, D:K.50 Water bridges: D:R.20 FEC.33: 20 residues within 4Å: Chain E: R.20, L.24, I.27, H.28, M.31, Y.35, K.50, M.57, E.61 Chain F: R.20, I.27, H.28, M.31, Y.35, K.50, M.57, E.61, A.167, S.168 Ligands: SO4.36 15 PLIP interactions: 9 interactions with chain E, 6 interactions with chain F, Hydrophobic interactions: E:L.24, E:I.27, E:I.27, E:M.31, E:E.61, F:I.27, F:E.61 Hydrogen bonds: E:Y.35, E:Y.35, F:S.168, F:S.168 Salt bridges: E:R.20, E:H.28, F:R.20, F:K.50 FEC.45: 20 residues within 4Å: Chain G: R.20, L.24, I.27, H.28, M.31, Y.35, K.50, M.57, R.58, E.61 Chain H: R.20, H.28, M.31, Y.35, K.50, M.57, E.61, A.167, S.168, K.169 15 PLIP interactions: 7 interactions with chain H, 8 interactions with chain G, Hydrophobic interactions: H:E.61, G:L.24, G:I.27, G:M.31, G:R.58, G:E.61 Hydrogen bonds: H:Y.35, H:S.168, H:S.168, H:K.169, G:Y.35 Salt bridges: H:R.20, H:K.50, G:R.20 Water bridges: G:R.20 FEC.56: 20 residues within 4Å: Chain I: R.20, L.24, H.28, M.31, Y.35, K.50, M.57, E.61, S.168 Chain J: R.20, I.27, H.28, M.31, Y.35, K.50, M.57, E.61, A.167, S.168 Ligands: SO4.60 16 PLIP interactions: 7 interactions with chain I, 9 interactions with chain J, Hydrophobic interactions: I:L.24, I:E.61, J:I.27, J:M.31, J:E.61 Hydrogen bonds: I:Y.35, I:Y.35, J:S.168, J:S.168 Water bridges: I:R.20, J:R.20, J:K.169 Salt bridges: I:R.20, I:H.28, J:R.20, J:K.50 FEC.69: 21 residues within 4Å: Chain K: R.20, L.24, I.27, H.28, M.31, Y.35, K.50, M.57, E.61 Chain L: R.20, I.27, H.28, M.31, Y.35, K.50, M.57, E.61, A.167, S.168, K.169 Ligands: SO4.72 16 PLIP interactions: 8 interactions with chain K, 8 interactions with chain L, Hydrophobic interactions: K:L.24, K:I.27, K:M.31, K:M.57, K:E.61, L:E.61 Hydrogen bonds: K:Y.35, L:S.168, L:S.168, L:K.169 Salt bridges: K:R.20, K:H.28, L:R.20, L:K.50 Water bridges: L:R.20, L:T.164 FEC.83: 20 residues within 4Å: Chain M: R.20, L.24, I.27, H.28, M.31, Y.35, K.50, M.57, E.61 Chain N: R.20, I.27, H.28, M.31, Y.35, K.50, M.57, E.61, A.167, S.168 Ligands: SO4.86 14 PLIP interactions: 8 interactions with chain M, 6 interactions with chain N, Hydrophobic interactions: M:L.24, M:I.27, M:I.27, M:M.31, M:E.61, N:I.27, N:E.61 Hydrogen bonds: M:Y.35, N:S.168, N:S.168 Salt bridges: M:R.20, M:H.28, N:R.20, N:K.50 FEC.95: 20 residues within 4Å: Chain O: R.20, L.24, I.27, H.28, M.31, Y.35, K.50, M.57, R.58, E.61 Chain P: R.20, H.28, M.31, Y.35, K.50, M.57, E.61, A.167, S.168, K.169 14 PLIP interactions: 6 interactions with chain P, 8 interactions with chain O, Hydrophobic interactions: P:E.61, O:L.24, O:I.27, O:M.31, O:R.58, O:E.61 Hydrogen bonds: P:S.168, P:S.168, P:K.169, O:Y.35 Salt bridges: P:R.20, P:K.50, O:R.20 Water bridges: O:R.20 FEC.106: 20 residues within 4Å: Chain Q: R.20, L.24, H.28, M.31, Y.35, K.50, M.57, E.61, S.168 Chain R: R.20, I.27, H.28, M.31, Y.35, K.50, M.57, E.61, A.167, S.168 Ligands: SO4.110 17 PLIP interactions: 7 interactions with chain Q, 10 interactions with chain R, Hydrophobic interactions: Q:L.24, Q:E.61, R:I.27, R:M.31, R:E.61 Hydrogen bonds: Q:Y.35, Q:Y.35, R:Y.35, R:S.168, R:S.168 Water bridges: Q:R.20, R:R.20, R:K.169 Salt bridges: Q:R.20, Q:H.28, R:R.20, R:K.50 FEC.119: 21 residues within 4Å: Chain S: R.20, L.24, I.27, H.28, M.31, Y.35, K.50, M.57, E.61 Chain T: R.20, I.27, H.28, M.31, Y.35, K.50, M.57, E.61, A.167, S.168, K.169 Ligands: SO4.122 17 PLIP interactions: 8 interactions with chain T, 9 interactions with chain S, Hydrophobic interactions: T:E.61, S:L.24, S:I.27, S:M.31, S:M.57, S:E.61 Hydrogen bonds: T:S.168, T:S.168, T:K.169, S:Y.35, S:Y.35 Water bridges: T:R.20, T:T.164 Salt bridges: T:R.20, T:K.50, S:R.20, S:H.28 FEC.133: 20 residues within 4Å: Chain U: R.20, L.24, I.27, H.28, M.31, Y.35, K.50, M.57, E.61 Chain V: R.20, I.27, H.28, M.31, Y.35, K.50, M.57, E.61, A.167, S.168 Ligands: SO4.136 14 PLIP interactions: 8 interactions with chain U, 6 interactions with chain V, Hydrophobic interactions: U:L.24, U:I.27, U:I.27, U:M.31, U:E.61, V:I.27, V:E.61 Hydrogen bonds: U:Y.35, V:S.168, V:S.168 Salt bridges: U:R.20, U:H.28, V:R.20, V:K.50 FEC.145: 20 residues within 4Å: Chain W: R.20, L.24, I.27, H.28, M.31, Y.35, K.50, M.57, R.58, E.61 Chain X: R.20, H.28, M.31, Y.35, K.50, M.57, E.61, A.167, S.168, K.169 16 PLIP interactions: 7 interactions with chain X, 9 interactions with chain W, Hydrophobic interactions: X:E.61, W:L.24, W:I.27, W:M.31, W:R.58, W:E.61 Hydrogen bonds: X:Y.35, X:S.168, X:S.168, X:K.169, W:Y.35, W:Y.35 Salt bridges: X:R.20, X:K.50, W:R.20 Water bridges: W:R.20

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Macedo, S. et al., The nature of the di-iron site in the bacterioferritin fromDesulfovibrio desulfuricans. NAT.STRUCT.BIOL. (2003)

Release Date

2003-04-01

Peptides

bacterioferritin: ABCDEFGHIJKLMNOPQRSTUVWX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
G

D
H

E
I

F
J

G
M

H
N

I
A

J
B

K
G

L
H

M
I

N
J

O
M

P
N

Q
A

R
B

S
G

T
H

U
I

V
J

W
M

X
N

bacterioferritin

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