SMTL ID : 1nkg.1 (1 other biounit)

Rhamnogalacturonan lyase from Aspergillus aculeatus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 4 residues within 4Å: Chain A: E.347, D.349, Q.351, D.502 6 PLIP interactions: 5 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.347, A:D.349, A:Q.351, A:D.502, A:D.502, H2O.5

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: N.19, S.229, R.230, S.231, G.232 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.19, A:S.229, A:R.230, A:S.231, A:G.232 SO4.3: 3 residues within 4Å: Chain A: K.395, S.489, S.490 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.396, A:S.396 Water bridges: A:G.491, A:G.491, A:G.491 Salt bridges: A:K.395 SO4.4: 4 residues within 4Å: Chain A: R.429, A.444, S.487, G.488 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:S.487, A:G.488 Water bridges: A:A.444, A:A.444, A:S.489, A:S.489 Salt bridges: A:R.429 SO4.5: 4 residues within 4Å: Chain A: Q.47, S.53, R.107, R.111 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.47, A:S.53 Water bridges: A:R.107 Salt bridges: A:R.107, A:R.111

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

McDonough, M.A. et al., Rhamnogalacturonan lyase reveals a unique three-domain modular structure for polysaccharide lyase family 4. Febs Lett. (2004)

Release Date

2004-05-25

Peptides

Rhamnogalacturonase B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Rhamnogalacturonase B

Related Entries With Identical Sequence