SMTL ID : 1nl4.1

Crystal Structure of Rat Farnesyl Transferase in Complex With A Potent Biphenyl Inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain B: D.275, C.277, Y.339, H.340 Ligands: FTL.3 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:D.275, B:D.275, B:C.277, B:H.340

1 x HFP: ALPHA-HYDROXYFARNESYLPHOSPHONIC ACID(Non-covalent)

HFP.2: 14 residues within 4Å: Chain A: K.110, Y.112 Chain B: W.80, Y.183, C.184, H.226, G.228, Y.229, C.232, R.269, Y.278, W.281, Y.339 Ligands: FTL.3 7 PLIP interactions: 6 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:W.80, B:Y.183, B:Y.229, B:W.281 Hydrogen bonds: B:R.269, B:Y.278, A:K.110

1 x FTL: 4-[(3-CYANO-BENZYL)-(3-METHYL-3H-IMIDAZOL-4-YLMETHYL)-AMINO]-2-NAPHTHALEN-1-YL-BENZONITRILE(Non-covalent)

FTL.3: 14 residues within 4Å: Chain A: Y.112 Chain B: L.74, S.77, W.80, W.84, D.275, C.277, D.330, D.337, F.338, Y.339, H.340 Ligands: ZN.1, HFP.2 11 PLIP interactions: 10 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:L.74, B:W.84, B:Y.339, B:Y.339 Hydrogen bonds: B:D.330, B:D.337, B:F.338, B:Y.339, A:Y.112 pi-Stacking: B:W.80, B:W.80

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Curtin, M.L. et al., Novel and Selective Imidazole-containing Biphenyl Inhibitors of Protein Farnesyltransferase. BIOORG.MED.CHEM.LETT. (2003)

Release Date

2003-02-11

Peptides

Protein farnesyltransferase alpha subunit: A
Protein farnesyltransferase beta subunit: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protein farnesyltransferase alpha subunit

Protein farnesyltransferase beta subunit

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