SMTL ID : 1nlx.1 (13 other biounits)

Crystal Structure of PHL P 6, A Major Timothy Grass Pollen Allergen Co-Crystallized with Zinc

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-14-mer

Ligands

28 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: D.76 Chain B: N.73, D.76, H.77 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Metal complexes: A:D.76, B:H.77 ZN.2: 4 residues within 4Å: Chain A: H.90 Chain N: E.93, H.105 Ligands: ARS.35 3 PLIP interactions: 2 interactions with chain N, 1 interactions with chain A Metal complexes: N:E.93, N:H.105, A:H.90 ZN.3: 5 residues within 4Å: Chain A: N.73, D.76, H.77 Chain B: D.76 Chain N: E.103 5 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B, 2 interactions with chain N Metal complexes: A:H.77, B:D.76, B:D.76, N:E.103, N:E.103 ZN.4: 2 residues within 4Å: Chain B: H.90 Ligands: ARS.5 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:H.90 ZN.6: 5 residues within 4Å: Chain C: D.76 Chain D: N.73, D.76, H.77 Chain F: E.103 4 PLIP interactions: 2 interactions with chain F, 1 interactions with chain D, 1 interactions with chain C Metal complexes: F:E.103, F:E.103, D:H.77, C:D.76 ZN.7: 2 residues within 4Å: Chain C: H.90 Ligands: ARS.8 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:H.90 ZN.9: 4 residues within 4Å: Chain C: N.73, D.76, H.77 Chain D: D.76 3 PLIP interactions: 2 interactions with chain D, 1 interactions with chain C Metal complexes: D:D.76, D:D.76, C:H.77 ZN.10: 4 residues within 4Å: Chain D: H.90 Chain F: E.93, H.105 Ligands: ARS.11 3 PLIP interactions: 2 interactions with chain F, 1 interactions with chain D Metal complexes: F:E.93, F:H.105, D:H.90 ZN.12: 5 residues within 4Å: Chain D: E.103 Chain E: D.76 Chain F: N.73, D.76, H.77 4 PLIP interactions: 2 interactions with chain D, 1 interactions with chain F, 1 interactions with chain E Metal complexes: D:E.103, D:E.103, F:H.77, E:D.76 ZN.13: 4 residues within 4Å: Chain E: H.90 Chain L: E.93, H.105 Ligands: ARS.30 3 PLIP interactions: 1 interactions with chain E, 2 interactions with chain L Metal complexes: E:H.90, L:E.93, L:H.105 ZN.14: 5 residues within 4Å: Chain E: N.73, D.76, H.77 Chain F: D.76 Chain L: E.103 5 PLIP interactions: 2 interactions with chain F, 1 interactions with chain E, 2 interactions with chain L Metal complexes: F:D.76, F:D.76, E:H.77, L:E.103, L:E.103 ZN.15: 4 residues within 4Å: Chain D: E.93, H.105 Chain F: H.90 Ligands: ARS.11 3 PLIP interactions: 1 interactions with chain F, 2 interactions with chain D Metal complexes: F:H.90, D:E.93, D:H.105 ZN.16: 4 residues within 4Å: Chain G: D.76 Chain H: N.73, D.76, H.77 3 PLIP interactions: 1 interactions with chain H, 2 interactions with chain G Metal complexes: H:H.77, G:D.76, G:D.76 ZN.17: 4 residues within 4Å: Chain G: H.90 Chain K: E.93, H.105 Ligands: ARS.27 3 PLIP interactions: 2 interactions with chain K, 1 interactions with chain G Metal complexes: K:E.93, K:H.105, G:H.90 ZN.18: 5 residues within 4Å: Chain G: N.73, D.76, H.77 Chain H: D.76 Chain K: E.103 4 PLIP interactions: 2 interactions with chain K, 1 interactions with chain G, 1 interactions with chain H Metal complexes: K:E.103, K:E.103, G:H.77, H:D.76 ZN.19: 1 residues within 4Å: Chain H: H.90 1 PLIP interactions: 1 interactions with chain H Metal complexes: H:H.90 ZN.20: 4 residues within 4Å: Chain I: D.76 Chain J: N.73, D.76, H.77 2 PLIP interactions: 1 interactions with chain J, 1 interactions with chain I Metal complexes: J:H.77, I:D.76 ZN.21: 4 residues within 4Å: Chain I: H.90 Chain M: E.93, H.105 Ligands: ARS.22 4 PLIP interactions: 3 interactions with chain M, 1 interactions with chain I Metal complexes: M:E.93, M:E.93, M:H.105, I:H.90 ZN.23: 5 residues within 4Å: Chain I: N.73, D.76, H.77 Chain J: D.76 Chain M: E.103 5 PLIP interactions: 2 interactions with chain M, 1 interactions with chain I, 2 interactions with chain J Metal complexes: M:E.103, M:E.103, I:H.77, J:D.76, J:D.76 ZN.24: 1 residues within 4Å: Chain J: H.90 1 PLIP interactions: 1 interactions with chain J Metal complexes: J:H.90 ZN.25: 5 residues within 4Å: Chain E: E.103 Chain K: D.76 Chain L: N.73, D.76, H.77 4 PLIP interactions: 1 interactions with chain L, 1 interactions with chain K, 2 interactions with chain E Metal complexes: L:H.77, K:D.76, E:E.103, E:E.103 ZN.26: 4 residues within 4Å: Chain G: E.93, H.105 Chain K: H.90 Ligands: ARS.27 3 PLIP interactions: 1 interactions with chain K, 2 interactions with chain G Metal complexes: K:H.90, G:E.93, G:H.105 ZN.28: 5 residues within 4Å: Chain G: E.103 Chain K: N.73, D.76, H.77 Chain L: D.76 5 PLIP interactions: 1 interactions with chain K, 2 interactions with chain L, 2 interactions with chain G Metal complexes: K:H.77, L:D.76, L:D.76, G:E.103, G:E.103 ZN.29: 4 residues within 4Å: Chain E: E.93, H.105 Chain L: H.90 Ligands: ARS.30 3 PLIP interactions: 2 interactions with chain E, 1 interactions with chain L Metal complexes: E:E.93, E:H.105, L:H.90 ZN.31: 5 residues within 4Å: Chain A: E.103 Chain M: D.76 Chain N: N.73, D.76, H.77 5 PLIP interactions: 1 interactions with chain N, 2 interactions with chain A, 2 interactions with chain M Metal complexes: N:H.77, A:E.103, A:E.103, M:D.76, M:D.76 ZN.32: 4 residues within 4Å: Chain I: E.93, H.105 Chain M: H.90 Ligands: ARS.22 3 PLIP interactions: 2 interactions with chain I, 1 interactions with chain M Metal complexes: I:E.93, I:H.105, M:H.90 ZN.33: 5 residues within 4Å: Chain I: E.103 Chain M: N.73, D.76, H.77 Chain N: D.76 4 PLIP interactions: 1 interactions with chain N, 2 interactions with chain I, 1 interactions with chain M Metal complexes: N:D.76, I:E.103, I:E.103, M:H.77 ZN.34: 4 residues within 4Å: Chain A: E.93, H.105 Chain N: H.90 Ligands: ARS.35 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain N Metal complexes: A:E.93, A:H.105, N:H.90

7 x ARS: ARSENIC(Non-covalent)

ARS.5: 3 residues within 4Å: Chain B: L.89, E.93 Ligands: ZN.4 No protein-ligand interaction detected (PLIP) ARS.8: 3 residues within 4Å: Chain C: L.89, E.93 Ligands: ZN.7 No protein-ligand interaction detected (PLIP) ARS.11: 4 residues within 4Å: Chain D: E.93 Chain F: E.93 Ligands: ZN.10, ZN.15 No protein-ligand interaction detected (PLIP) ARS.22: 4 residues within 4Å: Chain I: E.93 Chain M: E.93 Ligands: ZN.21, ZN.32 No protein-ligand interaction detected (PLIP) ARS.27: 4 residues within 4Å: Chain G: E.93 Chain K: E.93 Ligands: ZN.17, ZN.26 No protein-ligand interaction detected (PLIP) ARS.30: 6 residues within 4Å: Chain E: L.89, E.93 Chain L: L.89, E.93 Ligands: ZN.13, ZN.29 No protein-ligand interaction detected (PLIP) ARS.35: 5 residues within 4Å: Chain A: L.89, E.93 Chain N: E.93 Ligands: ZN.2, ZN.34 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fedorov, A.A. et al., Crystal Structure oh Phl p 6, a major timothy grass pollen allergen co-crystallized with Zinc. To be Published

Release Date

2003-01-21

Peptides

Pollen allergen Phl p 6: ABCDEFGHIJKLMN

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
M

N
N

Pollen allergen Phl p 6

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