SMTL ID : 1nv3.2 (1 other biounit)

Fructose-1,6-Bisphosphatase Complex with Magnesium, Fructose-6-Phosphate, Phosphate and Thallium (100 mM)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-tetramer

Ligands

4 x F6P: 6-O-phosphono-beta-D-fructofuranose(Non-covalent)

F6P.1: 15 residues within 4Å: Chain A: D.121, G.122, S.123, N.212, Y.215, Y.244, G.246, S.247, M.248, Y.264, K.274 Chain B: R.243 Ligands: PO4.4, TL.7, TL.8 20 PLIP interactions: 17 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:D.121, A:G.122, A:S.123, A:N.212, A:Y.215, A:Y.244, A:Y.244, A:M.248, A:Y.264, A:K.274 Water bridges: A:S.124, A:S.124, A:S.124, A:S.124, A:Y.215, A:Y.264, B:R.243, B:R.243 Salt bridges: A:K.274, B:R.243 F6P.9: 15 residues within 4Å: Chain A: R.243 Chain B: D.121, G.122, S.123, N.212, Y.215, Y.244, G.246, S.247, M.248, Y.264, K.274 Ligands: PO4.12, TL.15, TL.16 20 PLIP interactions: 17 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:D.121, B:G.122, B:S.123, B:N.212, B:Y.215, B:Y.244, B:Y.244, B:M.248, B:Y.264, B:K.274 Water bridges: B:S.124, B:S.124, B:S.124, B:S.124, B:Y.215, B:Y.264, A:R.243, A:R.243 Salt bridges: B:K.274, A:R.243 F6P.17: 15 residues within 4Å: Chain C: D.121, G.122, S.123, N.212, Y.215, Y.244, G.246, S.247, M.248, Y.264, K.274 Chain D: R.243 Ligands: PO4.20, TL.23, TL.24 17 PLIP interactions: 14 interactions with chain C, 3 interactions with chain D Hydrogen bonds: C:D.121, C:G.122, C:S.123, C:N.212, C:Y.244, C:M.248, C:K.274 Water bridges: C:S.124, C:S.124, C:S.124, C:S.124, C:Y.215, C:Y.264, D:R.243, D:R.243 Salt bridges: C:K.274, D:R.243 F6P.25: 15 residues within 4Å: Chain C: R.243 Chain D: D.121, G.122, S.123, N.212, Y.215, Y.244, G.246, S.247, M.248, Y.264, K.274 Ligands: PO4.28, TL.31, TL.32 17 PLIP interactions: 3 interactions with chain C, 14 interactions with chain D Water bridges: C:R.243, C:R.243, D:S.124, D:S.124, D:S.124, D:S.124, D:Y.215, D:Y.264 Salt bridges: C:R.243, D:K.274 Hydrogen bonds: D:D.121, D:G.122, D:S.123, D:N.212, D:Y.244, D:M.248, D:K.274

4 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 9 residues within 4Å: Chain A: D.74, E.97, E.98, D.118, L.120, D.121 Ligands: PO4.4, TL.5, TL.6 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.97, A:D.118, A:L.120 MG.10: 9 residues within 4Å: Chain B: D.74, E.97, E.98, D.118, L.120, D.121 Ligands: PO4.12, TL.13, TL.14 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:E.97, B:D.118, B:L.120 MG.18: 9 residues within 4Å: Chain C: D.74, E.97, E.98, D.118, L.120, D.121 Ligands: PO4.20, TL.21, TL.22 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:E.97, C:D.118, C:L.120 MG.26: 9 residues within 4Å: Chain D: D.74, E.97, E.98, D.118, L.120, D.121 Ligands: PO4.28, TL.29, TL.30 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:E.97, D:D.118, D:L.120

8 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 7 residues within 4Å: Chain A: G.26, T.27, G.28, E.29, M.30, K.112, Y.113 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:G.26, A:T.27, A:T.27, A:T.27, A:G.28, A:E.29, A:M.30, A:Y.113 Water bridges: A:T.31 Salt bridges: A:K.112 PO4.4: 14 residues within 4Å: Chain A: D.68, E.97, D.118, L.120, D.121, G.122, S.123, E.280 Ligands: F6P.1, MG.2, TL.5, TL.6, TL.7, TL.8 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.122, A:S.123, A:S.123, A:E.280 PO4.11: 7 residues within 4Å: Chain B: G.26, T.27, G.28, E.29, M.30, K.112, Y.113 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:G.26, B:T.27, B:T.27, B:T.27, B:G.28, B:E.29, B:M.30, B:Y.113 Water bridges: B:T.31 Salt bridges: B:K.112 PO4.12: 14 residues within 4Å: Chain B: D.68, E.97, D.118, L.120, D.121, G.122, S.123, E.280 Ligands: F6P.9, MG.10, TL.13, TL.14, TL.15, TL.16 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:G.122, B:S.123, B:S.123, B:E.280 PO4.19: 7 residues within 4Å: Chain C: G.26, T.27, G.28, E.29, M.30, K.112, Y.113 8 PLIP interactions: 8 interactions with chain C Hydrogen bonds: C:G.26, C:T.27, C:T.27, C:G.28, C:E.29, C:M.30 Water bridges: C:T.31 Salt bridges: C:K.112 PO4.20: 14 residues within 4Å: Chain C: D.68, E.97, D.118, L.120, D.121, G.122, S.123, E.280 Ligands: F6P.17, MG.18, TL.21, TL.22, TL.23, TL.24 7 PLIP interactions: 7 interactions with chain C Hydrogen bonds: C:D.68, C:D.121, C:G.122, C:S.123, C:S.123, C:E.280, C:E.280 PO4.27: 7 residues within 4Å: Chain D: G.26, T.27, G.28, E.29, M.30, K.112, Y.113 8 PLIP interactions: 8 interactions with chain D Hydrogen bonds: D:G.26, D:T.27, D:T.27, D:G.28, D:E.29, D:M.30 Water bridges: D:T.31 Salt bridges: D:K.112 PO4.28: 14 residues within 4Å: Chain D: D.68, E.97, D.118, L.120, D.121, G.122, S.123, E.280 Ligands: F6P.25, MG.26, TL.29, TL.30, TL.31, TL.32 8 PLIP interactions: 8 interactions with chain D Hydrogen bonds: D:D.68, D:D.121, D:D.121, D:G.122, D:S.123, D:S.123, D:E.280, D:E.280

16 x TL: THALLIUM (I) ION(Non-covalent)

TL.5: 7 residues within 4Å: Chain A: N.64, D.68, D.74, E.97, E.98 Ligands: MG.2, PO4.4 Ligand excluded by PLIP TL.6: 5 residues within 4Å: Chain A: D.74, L.120, S.123 Ligands: MG.2, PO4.4 Ligand excluded by PLIP TL.7: 7 residues within 4Å: Chain A: D.68, E.97, R.276, E.280 Ligands: F6P.1, PO4.4, TL.8 Ligand excluded by PLIP TL.8: 6 residues within 4Å: Chain A: K.274, R.276, E.280 Ligands: F6P.1, PO4.4, TL.7 Ligand excluded by PLIP TL.13: 7 residues within 4Å: Chain B: N.64, D.68, D.74, E.97, E.98 Ligands: MG.10, PO4.12 Ligand excluded by PLIP TL.14: 5 residues within 4Å: Chain B: D.74, L.120, S.123 Ligands: MG.10, PO4.12 Ligand excluded by PLIP TL.15: 7 residues within 4Å: Chain B: D.68, E.97, R.276, E.280 Ligands: F6P.9, PO4.12, TL.16 Ligand excluded by PLIP TL.16: 6 residues within 4Å: Chain B: K.274, R.276, E.280 Ligands: F6P.9, PO4.12, TL.15 Ligand excluded by PLIP TL.21: 7 residues within 4Å: Chain C: N.64, D.68, D.74, E.97, E.98 Ligands: MG.18, PO4.20 Ligand excluded by PLIP TL.22: 5 residues within 4Å: Chain C: D.74, L.120, S.123 Ligands: MG.18, PO4.20 Ligand excluded by PLIP TL.23: 7 residues within 4Å: Chain C: D.68, E.97, R.276, E.280 Ligands: F6P.17, PO4.20, TL.24 Ligand excluded by PLIP TL.24: 6 residues within 4Å: Chain C: K.274, R.276, E.280 Ligands: F6P.17, PO4.20, TL.23 Ligand excluded by PLIP TL.29: 7 residues within 4Å: Chain D: N.64, D.68, D.74, E.97, E.98 Ligands: MG.26, PO4.28 Ligand excluded by PLIP TL.30: 5 residues within 4Å: Chain D: D.74, L.120, S.123 Ligands: MG.26, PO4.28 Ligand excluded by PLIP TL.31: 7 residues within 4Å: Chain D: D.68, E.97, R.276, E.280 Ligands: F6P.25, PO4.28, TL.32 Ligand excluded by PLIP TL.32: 6 residues within 4Å: Chain D: K.274, R.276, E.280 Ligands: F6P.25, PO4.28, TL.31 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Choe, J.Y. et al., Interaction of Tl+ with product complexes of fructose-1,6-bisphosphatase. J.BIOL.CHEM. (2003)

Release Date

2003-07-08

Peptides

Fructose-1,6-bisphosphatase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Fructose-1,6-bisphosphatase

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