- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-hexamer
- Ligands
- 19 x SO4: SULFATE ION(Non-functional Binders)
- 6 x IMH: 1,4-DIDEOXY-4-AZA-1-(S)-(9-DEAZAHYPOXANTHIN-9-YL)-D-RIBITOL(Non-covalent)
IMH.5: 17 residues within 4Å:- Chain A: V.68, R.90, S.93, C.94, G.95, Y.162, V.183, E.184, M.185, E.186, D.208, P.211, W.214
- Chain B: H.9, R.47
- Ligands: SO4.1, IPA.13
7 PLIP interactions:6 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:M.185, A:E.186, A:D.208, B:H.9
- Water bridges: A:Y.162, A:D.208
- pi-Stacking: A:Y.162
IMH.12: 17 residues within 4Å:- Chain A: H.9, R.47
- Chain B: V.68, R.90, S.93, C.94, G.95, Y.162, V.183, E.184, M.185, E.186, D.208, P.211, W.214
- Ligands: IPA.6, SO4.9
7 PLIP interactions:2 interactions with chain A, 5 interactions with chain B- Hydrogen bonds: A:H.9, A:R.47, B:R.90, B:M.185, B:E.186, B:D.208
- Water bridges: B:D.208
IMH.19: 16 residues within 4Å:- Chain C: V.68, R.90, S.93, C.94, G.95, Y.162, V.183, E.184, M.185, E.186, D.208, W.214
- Chain D: H.9, R.47
- Ligands: SO4.17, IPA.25
7 PLIP interactions:2 interactions with chain D, 5 interactions with chain C- Hydrogen bonds: D:H.9, D:R.47, C:M.185, C:E.186, C:D.208
- Water bridges: C:Y.162
- pi-Stacking: C:Y.162
IMH.24: 15 residues within 4Å:- Chain C: H.9
- Chain D: R.90, S.93, C.94, G.95, Y.162, V.183, E.184, M.185, E.186, D.208, P.211, W.214
- Ligands: IPA.20, SO4.21
9 PLIP interactions:7 interactions with chain D, 2 interactions with chain C- Hydrogen bonds: D:M.185, D:E.186, D:D.208, C:H.9
- Water bridges: D:Y.162, D:Y.162, D:D.208, C:R.47
- pi-Stacking: D:Y.162
IMH.30: 14 residues within 4Å:- Chain E: R.90, S.93, C.94, G.95, Y.162, V.183, E.184, M.185, E.186, D.208, W.214
- Chain F: H.9
- Ligands: SO4.27, IPA.38
9 PLIP interactions:2 interactions with chain F, 7 interactions with chain E- Hydrogen bonds: F:H.9, E:M.185, E:E.186, E:D.208
- Water bridges: F:R.47, E:Y.162, E:Y.162, E:D.208
- pi-Stacking: E:Y.162
IMH.37: 16 residues within 4Å:- Chain E: H.9, R.47
- Chain F: V.68, R.90, S.93, C.94, G.95, Y.162, V.183, E.184, M.185, E.186, D.208, W.214
- Ligands: IPA.31, SO4.33
6 PLIP interactions:2 interactions with chain E, 4 interactions with chain F- Hydrogen bonds: E:H.9, E:R.47, F:M.185, F:E.186, F:D.208
- Water bridges: F:D.208
- 15 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)
IPA.6: 5 residues within 4Å:- Chain A: R.8, N.46, R.47
- Chain B: F.219
- Ligands: IMH.12
2 PLIP interactions:1 interactions with chain A, 1 interactions with chain B- Hydrogen bonds: A:R.47
- Hydrophobic interactions: B:F.219
IPA.7: 5 residues within 4Å:- Chain A: R.118, H.121, L.122
- Chain B: R.171
- Ligands: IPA.8
4 PLIP interactions:1 interactions with chain B, 3 interactions with chain A- Water bridges: B:R.171
- Hydrophobic interactions: A:H.121, A:L.122
- Hydrogen bonds: A:R.118
IPA.8: 5 residues within 4Å:- Chain A: H.121, H.125
- Chain F: R.171
- Ligands: SO4.4, IPA.7
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:H.125
- Water bridges: A:G.126
IPA.13: 4 residues within 4Å:- Chain B: R.8, N.46, R.47
- Ligands: IMH.5
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain B- Water bridges: A:D.208, A:D.208
- Hydrogen bonds: B:R.47
IPA.14: 4 residues within 4Å:- Chain A: R.171
- Chain B: R.118, H.121, L.122
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:H.121, B:L.122
- Hydrogen bonds: B:R.118
IPA.15: 4 residues within 4Å:- Chain B: H.121, H.125
- Chain C: R.171
- Ligands: SO4.10
2 PLIP interactions:1 interactions with chain C, 1 interactions with chain B- Hydrogen bonds: C:R.171
- Water bridges: B:G.126
IPA.16: 4 residues within 4Å:- Chain B: R.171
- Chain C: H.121, H.125
- Ligands: SO4.18
1 PLIP interactions:1 interactions with chain C- Water bridges: C:G.126
IPA.20: 6 residues within 4Å:- Chain C: R.8, H.9, N.46, R.47
- Chain D: F.219
- Ligands: IMH.24
4 PLIP interactions:3 interactions with chain D, 1 interactions with chain C- Hydrophobic interactions: D:F.219
- Water bridges: D:D.208, D:N.221
- Hydrogen bonds: C:R.47
IPA.25: 6 residues within 4Å:- Chain C: F.219
- Chain D: R.8, H.9, N.46, R.47
- Ligands: IMH.19
2 PLIP interactions:1 interactions with chain C, 1 interactions with chain D- Hydrophobic interactions: C:F.219
- Hydrogen bonds: D:R.47
IPA.26: 4 residues within 4Å:- Chain D: H.121, H.125
- Chain E: R.171
- Ligands: SO4.22
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:H.125
IPA.31: 6 residues within 4Å:- Chain E: R.8, H.9, N.46, R.47
- Chain F: F.219
- Ligands: IMH.37
3 PLIP interactions:1 interactions with chain E, 2 interactions with chain F- Hydrogen bonds: E:R.47
- Hydrophobic interactions: F:F.219
- Water bridges: F:D.208
IPA.32: 4 residues within 4Å:- Chain D: R.171
- Chain E: H.121, H.125
- Ligands: SO4.28
1 PLIP interactions:1 interactions with chain E- Hydrogen bonds: E:H.125
IPA.38: 5 residues within 4Å:- Chain E: F.219
- Chain F: R.8, N.46, R.47
- Ligands: IMH.30
5 PLIP interactions:1 interactions with chain F, 4 interactions with chain E- Hydrogen bonds: F:R.47
- Hydrophobic interactions: E:F.219
- Water bridges: E:D.208, E:D.208, E:N.221
IPA.39: 4 residues within 4Å:- Chain E: R.171
- Chain F: R.118, H.121, L.122
3 PLIP interactions:3 interactions with chain F- Hydrophobic interactions: F:H.121, F:L.122
- Hydrogen bonds: F:R.118
IPA.40: 4 residues within 4Å:- Chain A: R.171
- Chain F: H.121, H.125
- Ligands: SO4.34
1 PLIP interactions:1 interactions with chain F- Hydrogen bonds: F:H.125
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Shi, W. et al., Plasmodium falciparum Purine Nucleoside Phosphorylase: CRYSTAL STRUCTURES, IMMUCILLIN INHIBITORS, AND DUAL CATALYTIC FUNCTION. J.Biol.Chem. (2004)
- Release Date
- 2004-03-16
- Peptides
- uridine phosphorylase, putative: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-hexamer
- Ligands
- 19 x SO4: SULFATE ION(Non-functional Binders)
- 6 x IMH: 1,4-DIDEOXY-4-AZA-1-(S)-(9-DEAZAHYPOXANTHIN-9-YL)-D-RIBITOL(Non-covalent)
- 15 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Shi, W. et al., Plasmodium falciparum Purine Nucleoside Phosphorylase: CRYSTAL STRUCTURES, IMMUCILLIN INHIBITORS, AND DUAL CATALYTIC FUNCTION. J.Biol.Chem. (2004)
- Release Date
- 2004-03-16
- Peptides
- uridine phosphorylase, putative: ABCDEF
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
F