SMTL ID : 1nx8.1

Structure of carbapenem synthase (CarC) complexed with N-acetyl proline

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-hexamer

Ligands

6 x FE: FE (III) ION(Non-covalent)

FE.1: 4 residues within 4Å: Chain A: H.101, D.103, H.251 Ligands: AKG.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.101, A:D.103, A:H.251 FE.3: 4 residues within 4Å: Chain B: H.101, D.103, H.251 Ligands: AKG.4 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.101, B:D.103, B:H.251, H2O.4 FE.6: 4 residues within 4Å: Chain C: H.101, D.103, H.251 Ligands: AKG.7 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:H.101, C:D.103, C:H.251 FE.9: 4 residues within 4Å: Chain D: H.101, D.103, H.251 Ligands: AKG.10 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:H.101, D:D.103, D:H.251 FE.11: 4 residues within 4Å: Chain E: H.101, D.103, H.251 Ligands: AKG.12 4 PLIP interactions: 3 interactions with chain E, 1 Ligand-Water interactions Metal complexes: E:H.101, E:D.103, E:H.251, H2O.13 FE.14: 4 residues within 4Å: Chain F: H.101, D.103, H.251 Ligands: AKG.15 3 PLIP interactions: 3 interactions with chain F Metal complexes: F:H.101, F:D.103, F:H.251

6 x AKG: 2-OXOGLUTARIC ACID(Non-covalent)

AKG.2: 13 residues within 4Å: Chain A: L.84, V.92, L.98, H.101, D.103, L.116, T.130, H.251, R.253, R.263, L.265, R.267 Ligands: FE.1 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.84, A:L.98, A:L.116 Hydrogen bonds: A:D.103, A:T.130 Salt bridges: A:R.253, A:R.263, A:R.267 AKG.4: 14 residues within 4Å: Chain B: L.84, V.92, L.98, H.101, D.103, L.116, T.130, H.251, R.253, R.263, L.265, R.267 Ligands: FE.3, N7P.5 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:L.84, B:L.98, B:L.116 Salt bridges: B:H.101, B:R.253, B:R.263, B:R.267 AKG.7: 13 residues within 4Å: Chain C: L.84, V.92, L.98, H.101, D.103, T.130, H.251, R.253, R.263, L.265, R.267 Ligands: FE.6, N7P.8 6 PLIP interactions: 6 interactions with chain C Hydrophobic interactions: C:L.84, C:L.98 Salt bridges: C:H.101, C:R.253, C:R.263, C:R.267 AKG.10: 13 residues within 4Å: Chain D: L.84, V.92, L.98, H.101, D.103, L.116, T.130, H.251, R.253, R.263, L.265, R.267 Ligands: FE.9 8 PLIP interactions: 8 interactions with chain D Hydrophobic interactions: D:L.84, D:L.98, D:L.116 Hydrogen bonds: D:D.103, D:T.130 Salt bridges: D:R.253, D:R.263, D:R.267 AKG.12: 14 residues within 4Å: Chain E: L.84, V.92, L.98, H.101, D.103, L.116, T.130, H.251, R.253, R.263, L.265, R.267 Ligands: FE.11, N7P.13 7 PLIP interactions: 7 interactions with chain E Hydrophobic interactions: E:L.84, E:L.98, E:L.116 Salt bridges: E:H.101, E:R.253, E:R.263, E:R.267 AKG.15: 13 residues within 4Å: Chain F: L.84, V.92, L.98, H.101, D.103, T.130, H.251, R.253, R.263, L.265, R.267 Ligands: FE.14, N7P.16 6 PLIP interactions: 6 interactions with chain F Hydrophobic interactions: F:L.84, F:L.98 Salt bridges: F:H.101, F:R.253, F:R.263, F:R.267

4 x N7P: 1-ACETYL-L-PROLINE(Non-covalent)

N7P.5: 9 residues within 4Å: Chain B: V.92, H.101, D.103, G.104, Y.191, W.202, R.267, Q.269 Ligands: AKG.4 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:V.92, B:D.103, B:W.202 Hydrogen bonds: B:G.104, B:G.104, B:Y.191 N7P.8: 10 residues within 4Å: Chain C: V.92, H.101, D.103, G.104, L.106, Y.191, W.202, R.267, Q.269 Ligands: AKG.7 4 PLIP interactions: 4 interactions with chain C Hydrophobic interactions: C:V.92, C:W.202 Hydrogen bonds: C:G.104, C:L.106 N7P.13: 9 residues within 4Å: Chain E: V.92, H.101, D.103, G.104, Y.191, W.202, R.267, Q.269 Ligands: AKG.12 5 PLIP interactions: 5 interactions with chain E Hydrophobic interactions: E:V.92, E:D.103, E:W.202 Hydrogen bonds: E:G.104, E:G.104 N7P.16: 10 residues within 4Å: Chain F: V.92, H.101, D.103, G.104, L.106, Y.191, W.202, R.267, Q.269 Ligands: AKG.15 5 PLIP interactions: 5 interactions with chain F Hydrophobic interactions: F:V.92, F:W.202 Hydrogen bonds: F:G.104, F:L.106, F:Y.191

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Clifton, I.J. et al., Crystal structure of carbapenem synthase (CarC). J.Biol.Chem. (2003)

Release Date

2003-06-17

Peptides

Carbapenem synthase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
A

E
B

F
C

Carbapenem synthase

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