SMTL ID : 1o1h.2 (1 other biounit)

STRUCTURE OF GLUCOSE ISOMERASE DERIVATIZED WITH KR.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

homo-tetramer

Ligands

4 x CA: CALCIUM ION(Non-covalent)

CA.1: 4 residues within 4Å: Chain A: E.216, H.219, D.254, D.256 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.216, A:H.219, A:D.254, A:D.256, H2O.2 CA.9: 4 residues within 4Å: Chain B: E.216, H.219, D.254, D.256 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.216, B:H.219, B:D.254, B:D.256, H2O.34 CA.17: 4 residues within 4Å: Chain C: E.216, H.219, D.254, D.256 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:E.216, C:H.219, C:D.254, C:D.256, H2O.38 CA.25: 4 residues within 4Å: Chain D: E.216, H.219, D.254, D.256 5 PLIP interactions: 4 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:E.216, D:H.219, D:D.254, D:D.256, H2O.70

4 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 5 residues within 4Å: Chain A: E.180, E.216, D.244, D.286 Ligands: TRS.7 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.180, A:E.216, A:D.244, A:D.286 MG.10: 5 residues within 4Å: Chain B: E.180, E.216, D.244, D.286 Ligands: TRS.15 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:E.180, B:E.216, B:D.244, B:D.286 MG.18: 5 residues within 4Å: Chain C: E.180, E.216, D.244, D.286 Ligands: TRS.23 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:E.180, C:E.216, C:D.244, C:D.286 MG.26: 5 residues within 4Å: Chain D: E.180, E.216, D.244, D.286 Ligands: TRS.31 4 PLIP interactions: 4 interactions with chain D Metal complexes: D:E.180, D:E.216, D:D.244, D:D.286

8 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 5 residues within 4Å: Chain A: T.29, E.293, D.294 Chain C: A.365 Chain D: K.99 Ligand excluded by PLIP CL.4: 5 residues within 4Å: Chain A: R.265, F.268, A.378, M.379, L.382 Ligand excluded by PLIP CL.11: 5 residues within 4Å: Chain B: T.29, E.293, D.294 Chain C: K.99 Chain D: A.365 Ligand excluded by PLIP CL.12: 5 residues within 4Å: Chain B: R.265, F.268, A.378, M.379, L.382 Ligand excluded by PLIP CL.19: 5 residues within 4Å: Chain A: A.365 Chain B: K.99 Chain C: T.29, E.293, D.294 Ligand excluded by PLIP CL.20: 5 residues within 4Å: Chain C: R.265, F.268, A.378, M.379, L.382 Ligand excluded by PLIP CL.27: 5 residues within 4Å: Chain A: K.99 Chain B: A.365 Chain D: T.29, E.293, D.294 Ligand excluded by PLIP CL.28: 5 residues within 4Å: Chain D: R.265, F.268, A.378, M.379, L.382 Ligand excluded by PLIP

8 x KR: KRYPTON(Non-covalent)

KR.5: 4 residues within 4Å: Chain A: T.118, Y.133, A.135, L.164 No protein-ligand interaction detected (PLIP) KR.6: 6 residues within 4Å: Chain A: A.200, F.201, R.204 Chain B: Q.233, W.236, A.237 No protein-ligand interaction detected (PLIP) KR.13: 4 residues within 4Å: Chain B: T.118, Y.133, A.135, L.164 No protein-ligand interaction detected (PLIP) KR.14: 6 residues within 4Å: Chain A: Q.233, W.236, A.237 Chain B: A.200, F.201, R.204 No protein-ligand interaction detected (PLIP) KR.21: 4 residues within 4Å: Chain C: T.118, Y.133, A.135, L.164 No protein-ligand interaction detected (PLIP) KR.22: 6 residues within 4Å: Chain C: A.200, F.201, R.204 Chain D: Q.233, W.236, A.237 No protein-ligand interaction detected (PLIP) KR.29: 4 residues within 4Å: Chain D: T.118, Y.133, A.135, L.164 No protein-ligand interaction detected (PLIP) KR.30: 6 residues within 4Å: Chain C: Q.233, W.236, A.237 Chain D: A.200, F.201, R.204 No protein-ligand interaction detected (PLIP)

4 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.7: 10 residues within 4Å: Chain A: W.15, H.53, F.93, W.136, E.180, E.216, H.219, D.244, D.286 Ligands: MG.2 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:W.15, A:E.180, A:H.219 Water bridges: A:T.89, A:T.90 TRS.15: 10 residues within 4Å: Chain B: W.15, H.53, F.93, W.136, E.180, E.216, H.219, D.244, D.286 Ligands: MG.10 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:W.15, B:E.180, B:H.219 Water bridges: B:T.89, B:T.90, B:N.214 TRS.23: 10 residues within 4Å: Chain C: W.15, H.53, F.93, W.136, E.180, E.216, H.219, D.244, D.286 Ligands: MG.18 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:W.15, C:E.180, C:H.219 Water bridges: C:T.89, C:T.90 TRS.31: 10 residues within 4Å: Chain D: W.15, H.53, F.93, W.136, E.180, E.216, H.219, D.244, D.286 Ligands: MG.26 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:W.15, D:E.180, D:H.219 Water bridges: D:T.89, D:T.90, D:N.214

4 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.8: 3 residues within 4Å: Chain A: H.53, F.93, T.94 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.93, A:F.93 Hydrogen bonds: A:T.94 MPD.16: 8 residues within 4Å: Chain B: W.15, W.19, H.53, D.56, F.93, T.94, K.288 Chain C: F.25 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:W.15, B:F.93 Water bridges: B:D.56, B:D.56 MPD.24: 3 residues within 4Å: Chain C: H.53, F.93, T.94 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:F.93, C:F.93 Hydrogen bonds: C:T.94 MPD.32: 8 residues within 4Å: Chain A: F.25 Chain D: W.15, W.19, H.53, D.56, F.93, T.94, K.288 4 PLIP interactions: 4 interactions with chain D Hydrophobic interactions: D:W.15, D:F.93 Water bridges: D:D.56, D:D.56

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nowak, E. et al., Structure of Glucose Isomerase Derivatized with Kr. To be Published

Release Date

2002-11-27

Peptides

Xylose isomerase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Xylose isomerase

Related Entries With Identical Sequence