SMTL ID : 1ocm.1

THE CRYSTAL STRUCTURE OF MALONAMIDASE E2 COVALENTLY COMPLEXED WITH PYROPHOSPHATE FROM BRADYRHIZOBIUM JAPONICUM

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

2 x POP: PYROPHOSPHATE 2-(Covalent)

POP.1: 11 residues within 4Å: Chain A: A.111, R.113, G.130, S.131, Q.151, T.152, G.153, G.154, S.155, R.158, P.359 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:S.131, A:T.152, A:T.152, A:G.153, A:G.154, A:S.155 Water bridges: A:T.150, A:R.158, A:Q.277 Salt bridges: A:K.62, A:R.113, A:R.158 POP.2: 11 residues within 4Å: Chain B: A.111, R.113, G.130, S.131, Q.151, T.152, G.153, G.154, S.155, R.158, P.359 13 PLIP interactions: 13 interactions with chain B Hydrogen bonds: B:S.131, B:T.152, B:G.153, B:G.154, B:S.155 Water bridges: B:T.152, B:Q.277, B:Q.277, B:Q.277, B:T.356 Salt bridges: B:K.62, B:R.113, B:R.158

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shin, S. et al., Characterization of a Novel Ser-Cisser-Lys Catalytic Triad in Comparison with the Classical Ser-His-Asp Triad. J.Biol.Chem. (2003)

Release Date

2003-02-25

Peptides

MALONAMIDASE E2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

MALONAMIDASE E2

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