SMTL ID : 1oda.1

N-terminal of Sialoadhesin in complex with Me-a-9-N-(biphenyl-4-carbonyl)-amino-9-deoxy-Neu5Ac (BIP compound)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.31 Å

Oligo State

monomer

Ligands

1 x BDU: ME-A-9-N-(BIPHENYL-4-CARBONYL)-AMINO-9-DEOXY-NEU5AC(Non-covalent)

BDU.1: 9 residues within 4Å: Chain A: W.2, N.95, R.97, S.103, R.105, W.106, L.107, D.108, V.109 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:W.2, A:L.107, A:V.109, A:V.109 Hydrogen bonds: A:R.97, A:R.105, A:L.107, A:L.107 Salt bridges: A:R.97, A:R.105 pi-Stacking: A:Y.44

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zaccai, N.R. et al., Structure Guided Design of Sialic Acid-Based Siglec Inhibitors and Crystallographic Analysis in Complex with Sialoadhesin. Structure (2003)

Release Date

2003-08-14

Peptides

SIALOADHESIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

SIALOADHESIN

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