SMTL ID : 1oh4.1

Structural and thermodynamic dissection of specific mannan recognition by a carbohydrate-binding module

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.35 Å

Oligo State

monomer

Ligands

1 x BMA- BMA- BMA- BMA- BMA- GLA- GLA: beta-D-mannopyranose-(1-4)-[alpha-D-galactopyranose-(1-6)]beta-D-mannopyranose-(1-4)-[alpha-D-galactopyranose-(1-6)]beta-D-mannopyranose-(1-4)-beta-D-mannopyranose-(1-4)-beta-D-mannopyranose

BMA-BMA-BMA-BMA-BMA-GLA-GLA.1: 12 residues within 4Å: Chain A: S.28, T.30, W.31, D.62, W.63, E.65, R.67, R.98, Y.100, W.107, K.109, D.113 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.67

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: V.22, K.23, W.25, I.40 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:W.25 GOL.3: 5 residues within 4Å: Chain A: V.14, D.15, F.16, S.17, E.21 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:D.15, A:D.15, A:D.15, A:F.16, A:S.17, A:S.17 Water bridges: A:E.21

1 x CA: CALCIUM ION(Non-covalent)

CA.4: 4 residues within 4Å: Chain A: D.15, G.47, G.49, D.168 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:G.47, A:G.49, A:D.168, H2O.3, H2O.7

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 2 residues within 4Å: Chain A: R.134, H.136 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.134 Salt bridges: A:R.134, A:H.136

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Boraston, A.B. et al., Structural and Thermodynamic Dissection of Specific Mannan Recognition by a Carbohydrate Binding Module, Tmcbm27. Structure (2003)

Release Date

2004-03-16

Peptides

BETA-MANNOSIDASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

BETA-MANNOSIDASE

Related Entries With Identical Sequence