SMTL ID : 1oj7.2 (1 other biounit)

STRUCTURAL GENOMICS, UNKNOWN FUNCTION CRYSTAL STRUCTURE OF E. COLI K-12 YQHD

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

1 x NZQ: 5,6-DIHYDROXY-NADP(Non-covalent)

NZQ.1: 33 residues within 4Å: Chain A: G.58, G.59, G.60, S.61, P.88, N.89, P.90, G.115, G.116, S.117, D.120, T.159, L.160, A.162, T.163, S.165, N.168, G.170, A.171, V.172, K.181, Y.200, T.203, L.204, P.205, Q.208, D.215, H.219, L.273, H.288, H.292, H.302 Ligands: ZN.2 23 PLIP interactions: 23 interactions with chain A Hydrogen bonds: A:G.59, A:S.61, A:S.61, A:N.89, A:G.116, A:S.117, A:S.117, A:D.120, A:T.159, A:T.159, A:N.168, A:K.181, A:T.203, A:H.302 Water bridges: A:G.58, A:V.62, A:V.62, A:G.115, A:T.159, A:T.159, A:T.159, A:A.171, A:V.172

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 6 residues within 4Å: Chain A: D.215, H.219, H.288, H.302, L.306 Ligands: NZQ.1 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.215, A:D.215, A:H.219, A:H.288, A:H.302 ZN.3: 5 residues within 4Å: Chain B: D.215, H.219, H.288, H.302 Ligands: BO3.5 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.215, B:D.215, B:H.219, B:H.288, B:H.302

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 3 residues within 4Å: Chain B: G.59, G.60, S.61 Ligand excluded by PLIP

1 x BO3: BORIC ACID(Non-covalent)

BO3.5: 5 residues within 4Å: Chain B: D.215, H.219, H.288, H.302 Ligands: ZN.3 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sulzenbacher, G. et al., Crystal Structure of E.Coli Alcohol Dehydrogenase Yqhd: Evidence of a Covalently Modified Nadp Coenzyme. J.Mol.Biol. (2004)

Release Date

2004-07-08

Peptides

HYPOTHETICAL OXIDOREDUCTASE YQHD: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

HYPOTHETICAL OXIDOREDUCTASE YQHD

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