SMTL ID : 1opx.1 (1 other biounit)

Crystal structure of the traffic ATPase (HP0525) of the Helicobacter pylori type IV secretion system bound by sulfate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-hexamer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 8 residues within 4Å: Chain A: R.133, G.179, T.180, G.181, S.182, G.183, K.184, T.185 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:G.181, A:S.182, A:G.183, A:K.184, A:T.185, A:T.185 Water bridges: A:K.184, A:E.248 Salt bridges: A:R.133, A:K.184 SO4.2: 8 residues within 4Å: Chain B: R.133, G.179, T.180, G.181, S.182, G.183, K.184, T.185 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:G.181, B:S.182, B:G.183, B:K.184, B:T.185, B:T.185 Water bridges: B:K.184, B:K.184 Salt bridges: B:R.133, B:K.184 SO4.4: 8 residues within 4Å: Chain C: R.133, G.179, T.180, G.181, S.182, G.183, K.184, T.185 10 PLIP interactions: 10 interactions with chain C Hydrogen bonds: C:G.181, C:S.182, C:G.183, C:K.184, C:T.185, C:T.185 Water bridges: C:K.184, C:E.248 Salt bridges: C:R.133, C:K.184 SO4.5: 8 residues within 4Å: Chain D: R.133, G.179, T.180, G.181, S.182, G.183, K.184, T.185 10 PLIP interactions: 10 interactions with chain D Hydrogen bonds: D:G.181, D:S.182, D:G.183, D:K.184, D:T.185, D:T.185 Water bridges: D:K.184, D:K.184 Salt bridges: D:R.133, D:K.184 SO4.7: 8 residues within 4Å: Chain E: R.133, G.179, T.180, G.181, S.182, G.183, K.184, T.185 10 PLIP interactions: 10 interactions with chain E Hydrogen bonds: E:G.181, E:S.182, E:G.183, E:K.184, E:T.185, E:T.185 Water bridges: E:K.184, E:E.248 Salt bridges: E:R.133, E:K.184 SO4.8: 8 residues within 4Å: Chain F: R.133, G.179, T.180, G.181, S.182, G.183, K.184, T.185 10 PLIP interactions: 10 interactions with chain F Hydrogen bonds: F:G.181, F:S.182, F:G.183, F:K.184, F:T.185, F:T.185 Water bridges: F:K.184, F:K.184 Salt bridges: F:R.133, F:K.184

3 x 2PE: NONAETHYLENE GLYCOL(Non-covalent)

2PE.3: 7 residues within 4Å: Chain B: D.38, K.41, M.42, P.67, F.68, D.69, R.73 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.69, B:D.69, B:R.73 2PE.6: 7 residues within 4Å: Chain D: D.38, K.41, M.42, P.67, F.68, D.69, R.73 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:D.69, D:D.69, D:R.73 2PE.9: 7 residues within 4Å: Chain F: D.38, K.41, M.42, P.67, F.68, D.69, R.73 3 PLIP interactions: 3 interactions with chain F Hydrogen bonds: F:D.69, F:D.69, F:R.73

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Savvides, S.N. et al., VirB11 ATPases are dynamic hexameric assemblies: New insights into bacterial type IV secretion. Embo J. (2003)

Release Date

2003-05-06

Peptides

virB11 homolog: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

virB11 homolog

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