SMTL ID : 1p0n.1 (2 other biounits)

IPP:DMAPP isomerase type II, FMN complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

homo-octamer

Ligands

8 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.1: 13 residues within 4Å: Chain A: N.61, M.63, T.64, G.92, S.93, N.122, H.147, K.184, G.258, G.259, A.280, G.281 Chain B: D.289 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:M.63 Hydrogen bonds: A:N.61, A:T.64, A:T.64, A:S.93, A:N.122, A:N.122, A:H.147, A:K.184, A:K.184, A:K.184, A:G.258, A:G.259, A:A.280, A:G.281, A:H.282 FMN.2: 14 residues within 4Å: Chain B: N.61, M.63, T.64, G.92, S.93, N.122, H.147, K.184, V.186, G.258, G.259, M.279, A.280, G.281 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:M.63 Hydrogen bonds: B:T.64, B:S.93, B:N.122, B:N.122, B:H.147, B:K.184, B:K.184, B:K.184, B:G.258, B:G.259, B:A.280, B:G.281 FMN.3: 13 residues within 4Å: Chain C: N.61, M.63, T.64, G.92, S.93, N.122, H.147, K.184, G.258, G.259, A.280, G.281 Chain D: D.289 16 PLIP interactions: 16 interactions with chain C Hydrophobic interactions: C:M.63 Hydrogen bonds: C:N.61, C:T.64, C:T.64, C:S.93, C:N.122, C:N.122, C:H.147, C:K.184, C:K.184, C:K.184, C:G.258, C:G.259, C:A.280, C:G.281, C:H.282 FMN.4: 14 residues within 4Å: Chain D: N.61, M.63, T.64, G.92, S.93, N.122, H.147, K.184, V.186, G.258, G.259, M.279, A.280, G.281 13 PLIP interactions: 13 interactions with chain D Hydrophobic interactions: D:M.63 Hydrogen bonds: D:T.64, D:S.93, D:N.122, D:N.122, D:H.147, D:K.184, D:K.184, D:K.184, D:G.258, D:G.259, D:A.280, D:G.281 FMN.5: 13 residues within 4Å: Chain E: N.61, M.63, T.64, G.92, S.93, N.122, H.147, K.184, G.258, G.259, A.280, G.281 Chain F: D.289 16 PLIP interactions: 16 interactions with chain E Hydrophobic interactions: E:M.63 Hydrogen bonds: E:N.61, E:T.64, E:T.64, E:S.93, E:N.122, E:N.122, E:H.147, E:K.184, E:K.184, E:K.184, E:G.258, E:G.259, E:A.280, E:G.281, E:H.282 FMN.6: 14 residues within 4Å: Chain F: N.61, M.63, T.64, G.92, S.93, N.122, H.147, K.184, V.186, G.258, G.259, M.279, A.280, G.281 13 PLIP interactions: 13 interactions with chain F Hydrophobic interactions: F:M.63 Hydrogen bonds: F:T.64, F:S.93, F:N.122, F:N.122, F:H.147, F:K.184, F:K.184, F:K.184, F:G.258, F:G.259, F:A.280, F:G.281 FMN.7: 13 residues within 4Å: Chain G: N.61, M.63, T.64, G.92, S.93, N.122, H.147, K.184, G.258, G.259, A.280, G.281 Chain H: D.289 16 PLIP interactions: 16 interactions with chain G Hydrophobic interactions: G:M.63 Hydrogen bonds: G:N.61, G:T.64, G:T.64, G:S.93, G:N.122, G:N.122, G:H.147, G:K.184, G:K.184, G:K.184, G:G.258, G:G.259, G:A.280, G:G.281, G:H.282 FMN.8: 14 residues within 4Å: Chain H: N.61, M.63, T.64, G.92, S.93, N.122, H.147, K.184, V.186, G.258, G.259, M.279, A.280, G.281 13 PLIP interactions: 13 interactions with chain H Hydrophobic interactions: H:M.63 Hydrogen bonds: H:T.64, H:S.93, H:N.122, H:N.122, H:H.147, H:K.184, H:K.184, H:K.184, H:G.258, H:G.259, H:A.280, H:G.281

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Steinbacher, S. et al., Crystal Structure of the Type II Isopentenyl Diphosphate:Dimethylallyl Diphosphate Isomerase from Bacillus subtilis. J.Mol.Biol. (2003)

Release Date

2003-06-17

Peptides

Isopentenyl-diphosphate delta-isomerase: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

G
A

H
B

Isopentenyl-diphosphate delta-isomerase

Related Entries With Identical Sequence