SMTL ID : 1p1c.1

Guanidinoacetate Methyltransferase with Gd ion

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

2 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.1: 23 residues within 4Å: Chain A: M.13, G.31, F.32, G.33, M.34, A.35, I.36, A.37, I.52, E.53, C.54, N.55, V.58, G.78, L.79, W.80, E.81, D.98, T.99, Y.100 Chain B: A.181, D.182, R.184 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:E.29, A:F.32, A:F.32, A:G.33, A:M.34, A:A.35, A:I.36, A:A.37, A:C.54, A:W.80, A:E.81, A:D.98 pi-Stacking: A:Y.100 SAH.3: 24 residues within 4Å: Chain A: A.181, D.182, R.184 Chain B: M.13, G.31, F.32, G.33, M.34, A.35, I.36, A.37, I.52, E.53, C.54, N.55, V.58, G.78, L.79, W.80, E.81, D.98, T.99, Y.100, L.102 13 PLIP interactions: 13 interactions with chain B Hydrogen bonds: B:F.32, B:F.32, B:G.33, B:M.34, B:A.35, B:I.36, B:A.37, B:C.54, B:W.80, B:E.81, B:D.98, B:Y.100 pi-Stacking: B:Y.100

1 x GD3: GADOLINIUM ION(Non-covalent)

GD3.2: 2 residues within 4Å: Chain A: E.104 Chain B: S.143 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Metal complexes: B:S.143, A:E.104

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Komoto, J. et al., Monoclinic guanidinoacetate methyltransferase and gadolinium ion-binding characteristics. Acta Crystallogr.,Sect.D (2003)

Release Date

2003-04-29

Peptides

Guanidinoacetate N-methyltransferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Guanidinoacetate N-methyltransferase

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