SMTL ID : 1p42.3 (2 other biounits)

Crystal structure of Aquifex aeolicus LpxC Deacetylase (Zinc-Inhibited Form)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

7 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: E.72, H.73, H.225, D.229 Ligands: ZN.2 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.73, A:H.225, A:D.229, A:D.229, H2O.1 ZN.2: 4 residues within 4Å: Chain A: E.72, H.252 Ligands: ZN.1, MYR.5 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.72, A:H.252, H2O.1 ZN.3: 2 residues within 4Å: Chain A: H.57, H.187 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:H.57, A:H.187, H2O.1, H2O.1 ZN.4: 5 residues within 4Å: Chain A: G.1, E.119 Chain B: I.26, H.28, E.89 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Metal complexes: A:E.119, A:E.119, B:H.28, B:E.89 ZN.6: 4 residues within 4Å: Chain B: H.73, H.225, D.229 Ligands: ZN.7 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.73, B:H.225, B:D.229, B:D.229, H2O.7 ZN.7: 5 residues within 4Å: Chain B: E.72, D.229, H.252 Ligands: ZN.6, MYR.9 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.72, B:H.252, H2O.7 ZN.8: 2 residues within 4Å: Chain B: H.57, H.187 4 PLIP interactions: 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:H.57, B:H.187, H2O.7, H2O.7

2 x MYR: MYRISTIC ACID(Non-covalent)

MYR.5: 13 residues within 4Å: Chain A: I.17, H.57, S.58, E.72, T.178, F.179, I.188, G.194, G.197, S.198, V.204, H.252 Ligands: ZN.2 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:I.17, A:I.188, A:V.204 Water bridges: A:T.178, A:K.226 Salt bridges: A:K.226, A:H.252 MYR.9: 13 residues within 4Å: Chain B: I.17, H.18, H.57, S.58, E.72, T.178, F.179, I.188, G.194, G.197, V.204, H.252 Ligands: ZN.7 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:I.188, B:V.204 Water bridges: B:T.178, B:T.178, B:K.226 Salt bridges: B:K.226, B:H.252

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Whittington, D.A. et al., Crystal Structure of LpxC, a Zinc-Dependent Deacetylase Essential for Endotoxin Biosynthesis. Proc.Natl.Acad.Sci.USA (2003)

Release Date

2003-06-10

Peptides

UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase

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