- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.02 Å
- Oligo State
- homo-tetramer
- Ligands
- 16 x SO4: SULFATE ION(Non-functional Binders)
- 4 x T5A: P1-(5'-ADENOSYL)P5-(5'-THYMIDYL)PENTAPHOSPHATE(Non-covalent)
T5A.6: 22 residues within 4Å:- Chain A: Y.16, G.17, I.18, G.19, K.20, S.21, T.22, E.42, M.44, W.47, I.56, Y.60, Q.84, F.87, R.121, S.126, F.130, R.134, R.174, G.292, T.293, P.294
24 PLIP interactions:24 interactions with chain A- Hydrophobic interactions: A:Y.16, A:F.130
- Hydrogen bonds: A:G.17, A:I.18, A:G.19, A:K.20, A:S.21, A:S.21, A:T.22, A:T.22, A:E.42, A:Y.60, A:Q.84, A:Q.84, A:R.121, A:R.134, A:R.174, A:G.292
- Salt bridges: A:K.20, A:K.20, A:K.20
- pi-Stacking: A:F.87, A:F.130
- pi-Cation interactions: A:R.174
T5A.14: 22 residues within 4Å:- Chain B: Y.16, G.17, I.18, G.19, K.20, S.21, T.22, E.42, M.44, W.47, Q.84, F.87, Y.91, R.121, S.126, F.130, R.174, R.178, G.292, T.293, P.294, C.297
22 PLIP interactions:22 interactions with chain B- Hydrophobic interactions: B:F.130
- Hydrogen bonds: B:G.17, B:I.18, B:G.19, B:K.20, B:S.21, B:S.21, B:T.22, B:T.22, B:E.42, B:E.42, B:E.42, B:Q.84, B:Q.84, B:R.121, B:G.292
- Salt bridges: B:K.20, B:K.20, B:R.178
- pi-Stacking: B:F.87, B:F.130
- pi-Cation interactions: B:R.174
T5A.17: 22 residues within 4Å:- Chain C: Y.16, G.17, I.18, G.19, K.20, S.21, T.22, E.42, M.44, W.47, Y.60, Q.84, F.87, R.121, S.126, F.130, R.174, T.177, R.178, G.292, T.293, P.294
23 PLIP interactions:23 interactions with chain C- Hydrophobic interactions: C:W.47, C:F.130
- Hydrogen bonds: C:G.17, C:I.18, C:G.19, C:K.20, C:S.21, C:S.21, C:T.22, C:T.22, C:E.42, C:E.42, C:Y.60, C:Q.84, C:Q.84, C:G.292
- Water bridges: C:R.134, C:R.134
- Salt bridges: C:K.20, C:K.20
- pi-Stacking: C:F.87, C:F.130
- pi-Cation interactions: C:R.174
T5A.20: 22 residues within 4Å:- Chain D: Y.16, G.17, I.18, G.19, K.20, S.21, T.22, E.42, M.44, W.47, Y.60, Q.84, F.87, R.121, S.126, F.130, R.134, R.174, G.292, T.293, P.294, C.297
28 PLIP interactions:28 interactions with chain D- Hydrophobic interactions: D:Y.16, D:F.87, D:F.130
- Hydrogen bonds: D:G.17, D:G.17, D:I.18, D:G.19, D:K.20, D:S.21, D:S.21, D:T.22, D:T.22, D:E.42, D:E.42, D:Q.84, D:Q.84, D:R.121, D:R.134, D:R.174, D:R.174, D:G.292
- Water bridges: D:Y.16
- Salt bridges: D:K.20, D:K.20, D:K.20
- pi-Stacking: D:F.87, D:F.130
- pi-Cation interactions: D:R.174
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gardberg, A. et al., Structural basis for the dual thymidine and thymidylate kinase activity of herpes thymidine kinases. Structure (2003)
- Release Date
- 2003-11-04
- Peptides
- Thymidine kinase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.02 Å
- Oligo State
- homo-tetramer
- Ligands
- 16 x SO4: SULFATE ION(Non-functional Binders)
- 4 x T5A: P1-(5'-ADENOSYL)P5-(5'-THYMIDYL)PENTAPHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Gardberg, A. et al., Structural basis for the dual thymidine and thymidylate kinase activity of herpes thymidine kinases. Structure (2003)
- Release Date
- 2003-11-04
- Peptides
- Thymidine kinase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D