SMTL ID : 1p8j.11 (10 other biounits)

CRYSTAL STRUCTURE OF THE PROPROTEIN CONVERTASE FURIN

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-dimer

Ligands

2 x DKA- ARG- VAL- LYS- AR7- 0QE: DECANOYL-ARG-VAL-LYS-ARG-CHLOROMETHYLKETONE INHIBITOR(Non-covalent)

DKA-ARG-VAL-LYS-AR7-0QE.1: 28 residues within 4Å: Chain A: D.47, D.84, N.85, H.87, L.120, V.124, E.129, S.146, W.147, G.148, P.149, E.150, D.151, D.157, G.158, A.185, S.186, G.187, N.188, D.199, Y.201, T.202, T.258, T.260, S.261 Ligands: CA.5, SO4.6, SO4.17 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:H.87, A:L.120, A:V.124 Hydrogen bonds: A:N.85, A:S.146, A:G.148, A:G.148, A:P.149, A:A.185, A:N.188, A:Y.201, A:Y.201, A:S.261 Water bridges: A:E.150 Salt bridges: A:E.129, A:D.151, A:D.157, A:D.199 DKA-ARG-VAL-LYS-AR7-0QE.18: 28 residues within 4Å: Chain B: D.47, D.84, N.85, H.87, L.120, V.124, E.129, S.146, W.147, G.148, P.149, E.150, D.151, D.157, G.158, A.185, S.186, G.187, N.188, D.199, Y.201, T.202, T.258, T.260, S.261 Ligands: CA.21, SO4.23, SO4.28 21 PLIP interactions: 21 interactions with chain B Hydrophobic interactions: B:H.87, B:L.120, B:V.124 Hydrogen bonds: B:D.47, B:N.85, B:S.146, B:G.148, B:G.148, B:P.149, B:E.150, B:A.185, B:N.188, B:N.188, B:Y.201, B:S.261 Water bridges: B:D.199, B:D.199 Salt bridges: B:E.129, B:D.151, B:D.157, B:D.199

1 x NAG- NAG- BMA- MAN- NAG- GAL- NAG- GAL- MAN- NAG- FUL: beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-[beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)]alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[beta-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG-BMA-MAN-NAG-GAL-NAG-GAL-MAN-NAG-FUL.2: 13 residues within 4Å: Chain A: N.333 Chain B: R.23, R.191, F.216, N.218, V.219, W.221, L.299, N.300, A.301, D.302, W.304, A.411 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:N.300 Hydrogen bonds: B:A.301, B:A.411 Water bridges: B:L.299, B:W.304

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 1 residues within 4Å: Chain A: N.280 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.280

4 x CA: CALCIUM ION(Non-covalent)

CA.4: 6 residues within 4Å: Chain A: D.8, D.55, V.98, N.101, V.103, G.105 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.8, A:D.55, A:V.98, A:V.103, A:G.105 CA.5: 4 residues within 4Å: Chain A: D.151, D.194, E.224 Ligands: DKA-ARG-VAL-LYS-AR7-0QE.1 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.151, A:D.194, A:E.224, A:E.224, H2O.8 CA.20: 6 residues within 4Å: Chain B: D.8, D.55, V.98, N.101, V.103, G.105 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.8, B:D.55, B:V.98, B:V.103, B:G.105 CA.21: 4 residues within 4Å: Chain B: D.151, D.194, E.224 Ligands: DKA-ARG-VAL-LYS-AR7-0QE.18 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.151, B:D.194, B:E.224, H2O.20, H2O.22

19 x SO4: SULFATE ION(Non-functional Binders)

SO4.6: 5 residues within 4Å: Chain A: R.86, H.87, R.90, H.257 Ligands: DKA-ARG-VAL-LYS-AR7-0QE.1 Ligand excluded by PLIP SO4.7: 1 residues within 4Å: Chain A: R.86 Ligand excluded by PLIP SO4.8: 3 residues within 4Å: Chain A: S.387, G.454, T.455 Ligand excluded by PLIP SO4.9: 1 residues within 4Å: Chain A: K.458 Ligand excluded by PLIP SO4.10: 3 residues within 4Å: Chain A: E.123, T.125, D.126 Ligand excluded by PLIP SO4.11: 4 residues within 4Å: Chain A: G.39, N.138, H.141, K.279 Ligand excluded by PLIP SO4.12: 2 residues within 4Å: Chain A: H.373 Ligands: NAG-NAG-BMA-FUC.19 Ligand excluded by PLIP SO4.13: 4 residues within 4Å: Chain A: C.253, T.254, E.255, S.256 Ligand excluded by PLIP SO4.14: 3 residues within 4Å: Chain A: K.154, H.414, Y.416 Ligand excluded by PLIP SO4.15: 3 residues within 4Å: Chain A: P.77, R.78, Y.79 Ligand excluded by PLIP SO4.16: 3 residues within 4Å: Chain A: E.164, Q.381, R.383 Ligand excluded by PLIP SO4.17: 2 residues within 4Å: Ligands: DKA-ARG-VAL-LYS-AR7-0QE.1, DKA-ARG-VAL-LYS-AR7-0QE.1 Ligand excluded by PLIP SO4.22: 6 residues within 4Å: Chain A: R.376 Chain B: T.21, Q.22, N.26, K.295, D.323 Ligand excluded by PLIP SO4.23: 5 residues within 4Å: Chain B: R.86, H.87, R.90, H.257 Ligands: DKA-ARG-VAL-LYS-AR7-0QE.18 Ligand excluded by PLIP SO4.24: 1 residues within 4Å: Chain B: R.86 Ligand excluded by PLIP SO4.25: 3 residues within 4Å: Chain B: E.123, T.125, D.126 Ligand excluded by PLIP SO4.26: 3 residues within 4Å: Chain B: N.138, H.141, K.279 Ligand excluded by PLIP SO4.27: 3 residues within 4Å: Chain B: T.254, E.255, S.256 Ligand excluded by PLIP SO4.28: 3 residues within 4Å: Ligands: DKA-ARG-VAL-LYS-AR7-0QE.18, DKA-ARG-VAL-LYS-AR7-0QE.18, DKA-ARG-VAL-LYS-AR7-0QE.18 Ligand excluded by PLIP

1 x NAG- NAG- BMA- FUC: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG-NAG-BMA-FUC.19: 5 residues within 4Å: Chain A: L.368 Chain B: N.333, W.334, T.335 Ligands: SO4.12 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:W.334 Water bridges: B:T.336, B:T.336

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Henrich, S. et al., The Crystal Structure of the Proprotein Processing Proteinase Furin Explains its Stringent Specificity. Nat.Struct.Biol. (2003)

Release Date

2003-07-08

Peptides

Furin precursor: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
G

Furin precursor

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