SMTL ID : 1pix.2 (1 other biounit)

Crystal structure of the carboxyltransferase subunit of the bacterial ion pump glutaconyl-coenzyme A decarboxylase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-tetramer

Ligands

10 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: Y.269, A.270, S.271, G.274 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:A.270, A:S.271, A:S.271, A:G.274 SO4.2: 5 residues within 4Å: Chain A: E.47, K.50, A.51, D.52, K.115 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.52, A:D.52 Water bridges: A:A.53 Salt bridges: A:K.115 SO4.6: 4 residues within 4Å: Chain A: R.165, R.173 Chain B: R.165, R.173 13 PLIP interactions: 6 interactions with chain B, 7 interactions with chain A Water bridges: B:R.165, B:R.165, B:R.173, B:D.470, A:R.165, A:R.165, A:R.173, A:N.469, A:N.469 Salt bridges: B:R.165, B:R.173, A:R.165, A:R.173 SO4.7: 4 residues within 4Å: Chain B: E.47, A.51, D.52, K.115 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:D.52, B:D.52 Water bridges: B:A.53 Salt bridges: B:K.115 SO4.8: 4 residues within 4Å: Chain B: Y.269, A.270, S.271, G.274 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:A.270, B:S.271, B:S.271, B:G.274 SO4.10: 4 residues within 4Å: Chain C: Y.269, A.270, S.271, G.274 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:A.270, C:S.271, C:S.271, C:G.274 SO4.11: 5 residues within 4Å: Chain C: E.47, K.50, A.51, D.52, K.115 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:D.52, C:D.52 Water bridges: C:A.53 Salt bridges: C:K.115 SO4.15: 4 residues within 4Å: Chain C: R.165, R.173 Chain D: R.165, R.173 13 PLIP interactions: 7 interactions with chain C, 6 interactions with chain D Water bridges: C:R.165, C:R.165, C:R.173, C:N.469, C:N.469, D:R.165, D:R.165, D:R.173, D:D.470 Salt bridges: C:R.165, C:R.173, D:R.165, D:R.173 SO4.16: 4 residues within 4Å: Chain D: E.47, A.51, D.52, K.115 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:D.52, D:D.52 Water bridges: D:A.53 Salt bridges: D:K.115 SO4.17: 4 residues within 4Å: Chain D: Y.269, A.270, S.271, G.274 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:A.270, D:S.271, D:S.271, D:G.274

8 x FMT: FORMIC ACID(Non-functional Binders)

FMT.3: 5 residues within 4Å: Chain A: T.138, H.444, I.445, P.446, D.470 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.138 FMT.4: 4 residues within 4Å: Chain A: R.8, Y.9, H.337, R.579 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.337 Water bridges: A:R.579 FMT.5: 5 residues within 4Å: Chain A: K.300, A.301, N.355, R.549, E.553 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.355, A:R.549, A:E.553 FMT.9: 5 residues within 4Å: Chain B: T.138, H.444, I.445, P.446, D.470 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:T.138 FMT.12: 5 residues within 4Å: Chain C: T.138, H.444, I.445, P.446, D.470 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:T.138 FMT.13: 4 residues within 4Å: Chain C: R.8, Y.9, H.337, R.579 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:H.337 Water bridges: C:R.579 FMT.14: 5 residues within 4Å: Chain C: K.300, A.301, N.355, R.549, E.553 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:N.355, C:R.549, C:E.553 FMT.18: 5 residues within 4Å: Chain D: T.138, H.444, I.445, P.446, D.470 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:T.138

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wendt, K.S. et al., Crystal structure of the carboxyltransferase subunit of the bacterial sodium ion pump glutaconyl-coenzyme A decarboxylase. Embo J. (2003)

Release Date

2003-08-05

Peptides

Glutaconyl-CoA decarboxylase A subunit: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Glutaconyl-CoA decarboxylase A subunit

Related Entries With Identical Sequence