SMTL ID : 1pj1.1

RIBONUCLEOTIDE REDUCTASE R2-D84E/W48F SOAKED WITH FERROUS IONS AT PH 5

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

homo-dimer

Ligands

4 x FE: FE (III) ION(Non-covalent)

FE.1: 6 residues within 4Å: Chain A: E.84, E.115, H.118, F.208, E.238 Ligands: FE.2 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.84, A:E.84, A:E.115, A:H.118, A:E.238 FE.2: 7 residues within 4Å: Chain A: W.111, E.115, E.204, F.208, E.238, H.241 Ligands: FE.1 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.115, A:E.204, A:E.204, A:E.238, A:H.241 FE.10: 6 residues within 4Å: Chain B: E.84, E.115, H.118, F.208, E.238 Ligands: FE.11 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:E.84, B:E.84, B:E.115, B:H.118, B:E.238 FE.11: 7 residues within 4Å: Chain B: W.111, E.115, E.204, F.208, E.238, H.241 Ligands: FE.10 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:E.115, B:E.204, B:E.204, B:E.238, B:H.241

15 x HG: MERCURY (II) ION(Non-covalent)

HG.3: 5 residues within 4Å: Chain A: Y.194, A.265, K.269, C.272 Ligands: HG.9 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:C.272 HG.4: 4 residues within 4Å: Chain A: Y.156, Y.157, C.196 Ligands: HG.8 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:C.196 HG.5: 3 residues within 4Å: Chain A: V.210, A.213, C.214 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:V.210, A:C.214 HG.6: 3 residues within 4Å: Chain A: C.305, Q.306, E.309 No protein-ligand interaction detected (PLIP) HG.7: 3 residues within 4Å: Chain A: K.191, I.264, C.268 No protein-ligand interaction detected (PLIP) HG.8: 5 residues within 4Å: Chain A: Y.157, C.196, L.197, V.200 Ligands: HG.4 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:C.196 HG.9: 5 residues within 4Å: Chain A: Y.194, L.195, C.268, C.272 Ligands: HG.3 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:C.268, A:C.268, A:C.272 HG.12: 5 residues within 4Å: Chain B: Y.156, Y.157, C.196, V.200 Ligands: HG.19 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:C.196 HG.13: 4 residues within 4Å: Chain B: Y.194, L.195, C.268, C.272 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:C.268, B:C.268, B:C.272, H2O.10 HG.14: 4 residues within 4Å: Chain B: V.210, A.213, C.214, L.304 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:V.210, B:C.214 HG.15: 4 residues within 4Å: Chain B: M.198, C.272, L.275, F.276 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:C.272 HG.16: 4 residues within 4Å: Chain B: K.284, C.305, E.309 Ligands: HG.18 No protein-ligand interaction detected (PLIP) HG.17: 5 residues within 4Å: Chain B: I.72, C.214, F.218, M.296, L.299 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:C.214 HG.18: 4 residues within 4Å: Chain B: C.305, Q.306, E.309 Ligands: HG.16 No protein-ligand interaction detected (PLIP) HG.19: 5 residues within 4Å: Chain B: Y.157, C.196, L.197, V.200 Ligands: HG.12 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:C.196

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Voegtli, W.C. et al., Variable coordination geometries at the diiron(II) active site of ribonucleotide reductase R2. J.Am.Chem.Soc. (2003)

Release Date

2004-01-13

Peptides

Ribonucleoside-diphosphate reductase 1 beta chain: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ribonucleoside-diphosphate reductase 1 beta chain

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