SMTL ID : 1pji.1

Crystal structure of wild type Lactococcus lactis FPG complexed to a 1,3 propanediol containing DNA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain C: C.245, C.248, C.265, C.268 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.245, C:C.248, C:C.265, C:C.268

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 11 residues within 4Å: Chain A: T.9, T.10 Chain C: L.34, Y.58, H.72, R.74, T.113, E.115, Y.125, K.129 Ligands: GOL.3 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:R.74, C:R.74, C:E.115, C:Y.125, C:K.129 GOL.3: 4 residues within 4Å: Chain A: T.10 Chain C: L.34, R.74 Ligands: GOL.2 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:R.74, C:R.74 GOL.4: 6 residues within 4Å: Chain C: R.16, Q.20, L.81, F.98, D.100, G.101 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:R.16, C:D.100, C:G.101 GOL.5: 7 residues within 4Å: Chain A: T.6, T.8, T.9 Chain B: A.6, A.7 Chain C: G.259, R.260 3 PLIP interactions: 3 interactions with chain C Water bridges: C:A.258, C:A.258, C:R.260

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pereira de Jesus, K. et al., Structural insights into abasic site for Fpg specific binding and catalysis: comparative high-resolution crystallographic studies of Fpg bound to various models of abasic site analogues-containing DNA. Nucleic Acids Res. (2005)

Release Date

2004-08-03

Peptides

Formamidopyrimidine-DNA glycosylase: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
A

Formamidopyrimidine-DNA glycosylase

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