- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x CA: CALCIUM ION(Non-covalent)
- 4 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
ATP.2: 22 residues within 4Å:- Chain A: K.226, V.268, K.270, A.274, H.275, S.276, G.277, K.280, E.306, P.307, F.308, I.309, D.314, R.329, W.336, K.337, T.338, N.339, E.374, L.376, E.387
- Ligands: CA.1
23 PLIP interactions:23 interactions with chain A- Hydrogen bonds: A:K.270, A:H.275, A:S.276, A:G.277, A:M.278, A:P.307, A:I.309, A:D.314, A:D.314, A:R.329, A:T.338, A:N.339
- Water bridges: A:S.276, A:R.329, A:R.329, A:R.329, A:E.374
- Salt bridges: A:K.226, A:K.226, A:K.270, A:K.280, A:K.280
- pi-Stacking: A:W.336
ATP.5: 22 residues within 4Å:- Chain B: K.226, V.268, K.270, A.274, H.275, S.276, G.277, K.280, E.306, P.307, F.308, I.309, D.314, R.329, W.336, K.337, T.338, N.339, E.374, L.376, E.387
- Ligands: CA.4
19 PLIP interactions:19 interactions with chain B- Hydrogen bonds: B:K.270, B:H.275, B:S.276, B:G.277, B:E.306, B:P.307, B:I.309, B:D.314, B:D.314, B:R.329, B:T.338, B:N.339
- Water bridges: B:S.276, B:E.374
- Salt bridges: B:K.226, B:K.226, B:K.270, B:K.280, B:K.280
ATP.8: 19 residues within 4Å:- Chain C: K.226, I.248, V.268, K.270, H.275, S.276, G.277, K.280, E.306, P.307, F.308, I.309, R.329, W.336, K.337, E.374, L.376, E.387
- Ligands: CA.7
12 PLIP interactions:12 interactions with chain C- Hydrogen bonds: C:K.270, C:S.276, C:G.277, C:P.307, C:I.309, C:D.314, C:R.329
- Salt bridges: C:K.226, C:K.226, C:K.270, C:K.280, C:K.280
ATP.10: 23 residues within 4Å:- Chain D: K.226, I.248, V.268, K.270, A.274, H.275, S.276, G.277, K.280, E.306, P.307, F.308, I.309, D.314, R.329, W.336, K.337, T.338, N.339, E.374, L.376, E.387
- Ligands: CA.9
19 PLIP interactions:19 interactions with chain D- Hydrogen bonds: D:K.270, D:A.274, D:S.276, D:G.277, D:M.278, D:E.306, D:P.307, D:I.309, D:D.314, D:R.329, D:T.338, D:N.339
- Water bridges: D:K.226
- Salt bridges: D:K.226, D:K.226, D:K.270, D:K.280, D:K.280
- pi-Stacking: D:W.336
- 2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.3: 5 residues within 4Å:- Chain A: H.218, F.365, G.366
- Chain B: H.218, F.365
No protein-ligand interaction detected (PLIP)EDO.6: 5 residues within 4Å:- Chain B: D.121, T.125, W.127, R.187, L.395
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:T.125, B:W.127, B:R.187
- Water bridges: B:L.395
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Brautigam, C.A. et al., Tetramerization and ATP binding by a protein comprising the A, B, and C domains of rat synapsin I. J.Biol.Chem. (2004)
- Release Date
- 2004-03-23
- Peptides
- rat synapsin I: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x CA: CALCIUM ION(Non-covalent)
- 4 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
- 2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Brautigam, C.A. et al., Tetramerization and ATP binding by a protein comprising the A, B, and C domains of rat synapsin I. J.Biol.Chem. (2004)
- Release Date
- 2004-03-23
- Peptides
- rat synapsin I: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D