SMTL ID : 1pl8.1 (2 other biounits)

human SDH/NAD+ complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-tetramer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: C.44, S.46, H.69, E.70, E.155 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:C.44, A:H.69, A:E.70, H2O.9 ZN.3: 4 residues within 4Å: Chain B: C.44, H.69, E.70, E.155 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:C.44, B:H.69, B:E.70 ZN.5: 5 residues within 4Å: Chain C: C.44, S.46, H.69, E.70, E.155 4 PLIP interactions: 3 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:C.44, C:H.69, C:E.70, H2O.34 ZN.7: 4 residues within 4Å: Chain D: C.44, H.69, E.70, E.155 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:C.44, D:H.69, D:E.70

4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.2: 18 residues within 4Å: Chain A: G.179, G.181, P.182, I.183, T.202, D.203, L.204, R.208, I.223, C.249, T.250, A.252, V.272, G.273, L.274, V.296, F.297, R.298 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:I.183 Hydrogen bonds: A:A.180, A:G.181, A:I.183, A:L.204, A:R.208, A:R.208, A:T.250, A:L.274, A:V.296, A:R.298 Water bridges: A:G.45, A:G.181, A:G.184, A:T.202, A:V.296 Salt bridges: A:R.208 NAD.4: 18 residues within 4Å: Chain B: G.179, G.181, P.182, I.183, T.202, D.203, L.204, R.208, I.223, C.249, T.250, A.252, V.272, G.273, L.274, V.296, F.297, R.298 18 PLIP interactions: 18 interactions with chain B Hydrophobic interactions: B:I.183 Hydrogen bonds: B:A.180, B:G.181, B:I.183, B:L.204, B:R.208, B:R.208, B:T.250, B:L.274, B:V.296, B:R.298 Water bridges: B:G.45, B:G.45, B:G.181, B:G.181, B:R.208, B:V.296 Salt bridges: B:R.208 NAD.6: 18 residues within 4Å: Chain C: G.179, G.181, P.182, I.183, T.202, D.203, L.204, R.208, I.223, C.249, T.250, A.252, V.272, G.273, L.274, V.296, F.297, R.298 17 PLIP interactions: 17 interactions with chain C Hydrophobic interactions: C:I.183 Hydrogen bonds: C:A.180, C:G.181, C:I.183, C:L.204, C:R.208, C:R.208, C:T.250, C:L.274, C:V.296, C:R.298 Water bridges: C:G.45, C:G.181, C:G.184, C:T.202, C:V.296 Salt bridges: C:R.208 NAD.8: 18 residues within 4Å: Chain D: G.179, G.181, P.182, I.183, T.202, D.203, L.204, R.208, I.223, C.249, T.250, A.252, V.272, G.273, L.274, V.296, F.297, R.298 18 PLIP interactions: 18 interactions with chain D Hydrophobic interactions: D:I.183 Hydrogen bonds: D:A.180, D:G.181, D:I.183, D:L.204, D:R.208, D:R.208, D:T.250, D:L.274, D:V.296, D:R.298 Water bridges: D:G.45, D:G.45, D:G.181, D:G.181, D:R.208, D:V.296 Salt bridges: D:R.208

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pauly, T.A. et al., X-ray crystallographic and kinetic studies of human sorbitol dehydrogenase. Structure (2003)

Release Date

2004-02-17

Peptides

human sorbitol dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

human sorbitol dehydrogenase

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