SMTL ID : 1pn4.1 (1 other biounit)

Crystal structure of 2-enoyl-CoA hydratase 2 domain of Candida tropicalis multifunctional enzyme type 2 complexed with (3R)-hydroxydecanoyl-CoA.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

homo-dimer

Ligands

2 x HDC: 3R-HYDROXYDECANOYL-COENZYME A(Non-covalent)

HDC.1: 26 residues within 4Å: Chain A: T.49, F.50, Q.56, N.57, L.71, L.72, H.73, G.74, E.75, K.103, V.108, Y.131, F.132, D.182, N.184, Q.187, I.202, L.203, H.204, G.205, R.229, F.230, T.231, G.232, I.233 Ligands: EDO.2 22 PLIP interactions: 22 interactions with chain A Hydrophobic interactions: A:F.50, A:Q.56, A:L.71, A:L.72, A:Y.131, A:F.132, A:F.230 Hydrogen bonds: A:H.73, A:H.73, A:G.74, A:N.184, A:Q.187, A:G.205, A:R.229, A:F.230, A:T.231 Water bridges: A:M.206, A:I.233, A:V.234 Salt bridges: A:K.103 pi-Cation interactions: A:R.229, A:R.229 HDC.3: 28 residues within 4Å: Chain B: T.49, F.50, Q.56, N.57, F.59, L.71, L.72, H.73, G.74, E.75, K.103, V.108, Y.131, F.132, D.182, N.184, Q.187, I.202, L.203, H.204, G.205, R.229, F.230, T.231, G.232, I.233 Ligands: EDO.4, EDO.6 24 PLIP interactions: 24 interactions with chain B Hydrophobic interactions: B:F.50, B:Q.56, B:F.59, B:L.71, B:L.72, B:H.73, B:Y.131, B:F.132 Hydrogen bonds: B:H.73, B:H.73, B:G.74, B:N.184, B:Q.187, B:Q.187, B:G.205, B:R.229, B:R.229, B:F.230, B:T.231, B:I.233 Water bridges: B:M.206 Salt bridges: B:K.103 pi-Cation interactions: B:R.229, B:R.229

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 3 residues within 4Å: Chain A: P.68, N.184 Ligands: HDC.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.184 Water bridges: A:N.57 EDO.4: 3 residues within 4Å: Chain B: P.68, N.184 Ligands: HDC.3 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.184 Water bridges: B:L.71, B:N.184 EDO.5: 7 residues within 4Å: Chain B: E.75, T.151, N.152, Q.153, K.227, R.229, N.268 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:K.227, B:R.229 Water bridges: B:R.146 EDO.6: 3 residues within 4Å: Chain B: Q.56, N.57 Ligands: HDC.3 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.56, B:N.57

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Koski, M.K. et al., A Two-domain Structure of One Subunit Explains Unique Features of Eukaryotic Hydratase 2. J.Biol.Chem. (2004)

Release Date

2004-04-13

Peptides

Peroxisomal hydratase-dehydrogenase-epimerase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Peroxisomal hydratase-dehydrogenase-epimerase

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