- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.85 Å
- Oligo State
- homo-14-mer
- Ligands
- 14 x SO4: SULFATE ION(Non-functional Binders)
- 18 x IMD: IMIDAZOLE(Non-covalent)
IMD.8: 3 residues within 4Å:- Chain A: R.99
- Chain B: Y.201, K.221
Ligand excluded by PLIPIMD.9: 5 residues within 4Å:- Chain A: K.317, G.321, R.323
- Chain M: K.319, G.320
Ligand excluded by PLIPIMD.10: 6 residues within 4Å:- Chain A: R.251
- Chain B: G.250, R.251, G.252, A.253, L.254
Ligand excluded by PLIPIMD.11: 6 residues within 4Å:- Chain B: K.319, G.320, G.321
- Chain L: K.317, G.321, R.323
Ligand excluded by PLIPIMD.12: 4 residues within 4Å:- Chain A: K.319, G.320
- Chain M: G.321, R.323
Ligand excluded by PLIPIMD.13: 2 residues within 4Å:- Chain B: R.99
- Chain C: Y.201
Ligand excluded by PLIPIMD.14: 5 residues within 4Å:- Chain E: R.99
- Chain F: Y.201, K.221, E.224, L.225
Ligand excluded by PLIPIMD.15: 3 residues within 4Å:- Chain A: Y.201, E.224
- Chain G: R.99
Ligand excluded by PLIPIMD.16: 3 residues within 4Å:- Chain B: G.321, R.323
- Chain L: K.319
Ligand excluded by PLIPIMD.37: 3 residues within 4Å:- Chain H: R.99
- Chain I: Y.201, K.221
Ligand excluded by PLIPIMD.38: 5 residues within 4Å:- Chain F: K.319, G.320
- Chain H: K.317, G.321, R.323
Ligand excluded by PLIPIMD.39: 6 residues within 4Å:- Chain H: R.251
- Chain I: G.250, R.251, G.252, A.253, L.254
Ligand excluded by PLIPIMD.40: 6 residues within 4Å:- Chain E: K.317, G.321, R.323
- Chain I: K.319, G.320, G.321
Ligand excluded by PLIPIMD.41: 4 residues within 4Å:- Chain F: G.321, R.323
- Chain H: K.319, G.320
Ligand excluded by PLIPIMD.42: 2 residues within 4Å:- Chain I: R.99
- Chain J: Y.201
Ligand excluded by PLIPIMD.43: 5 residues within 4Å:- Chain L: R.99
- Chain M: Y.201, K.221, E.224, L.225
Ligand excluded by PLIPIMD.44: 3 residues within 4Å:- Chain H: Y.201, E.224
- Chain N: R.99
Ligand excluded by PLIPIMD.45: 3 residues within 4Å:- Chain E: K.319
- Chain I: G.321, R.323
Ligand excluded by PLIP- 18 x GOL: GLYCEROL(Non-functional Binders)
GOL.17: 6 residues within 4Å:- Chain F: Q.156, L.157, L.191, E.195, H.199, R.230
Ligand excluded by PLIPGOL.18: 2 residues within 4Å:- Chain A: R.99
- Chain B: K.198
Ligand excluded by PLIPGOL.19: 2 residues within 4Å:- Chain C: R.99
- Chain D: K.198
Ligand excluded by PLIPGOL.20: 7 residues within 4Å:- Chain D: T.96, M.98, Y.103, K.106, N.273
- Chain E: A.203, R.204
Ligand excluded by PLIPGOL.21: 2 residues within 4Å:- Chain B: R.99
- Chain C: K.198
Ligand excluded by PLIPGOL.22: 2 residues within 4Å:- Chain D: R.99
- Chain E: K.198
Ligand excluded by PLIPGOL.23: 2 residues within 4Å:- Chain E: R.99
- Chain F: K.198
Ligand excluded by PLIPGOL.24: 2 residues within 4Å:- Chain F: R.99
- Chain G: K.198
Ligand excluded by PLIPGOL.25: 2 residues within 4Å:- Chain A: K.198
- Chain G: R.99
Ligand excluded by PLIPGOL.46: 6 residues within 4Å:- Chain M: Q.156, L.157, L.191, E.195, H.199, R.230
Ligand excluded by PLIPGOL.47: 2 residues within 4Å:- Chain H: R.99
- Chain I: K.198
Ligand excluded by PLIPGOL.48: 2 residues within 4Å:- Chain J: R.99
- Chain K: K.198
Ligand excluded by PLIPGOL.49: 7 residues within 4Å:- Chain K: T.96, M.98, Y.103, K.106, N.273
- Chain L: A.203, R.204
Ligand excluded by PLIPGOL.50: 2 residues within 4Å:- Chain I: R.99
- Chain J: K.198
Ligand excluded by PLIPGOL.51: 2 residues within 4Å:- Chain K: R.99
- Chain L: K.198
Ligand excluded by PLIPGOL.52: 2 residues within 4Å:- Chain L: R.99
- Chain M: K.198
Ligand excluded by PLIPGOL.53: 2 residues within 4Å:- Chain M: R.99
- Chain N: K.198
Ligand excluded by PLIPGOL.54: 2 residues within 4Å:- Chain H: K.198
- Chain N: R.99
Ligand excluded by PLIP- 8 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
MPD.26: 8 residues within 4Å:- Chain A: T.58, A.61, K.263, A.266, D.267
- Chain B: N.207, N.209, H.210
3 PLIP interactions:1 interactions with chain A, 2 interactions with chain B- Hydrophobic interactions: A:A.266, B:N.209
- Hydrogen bonds: B:N.207
MPD.27: 5 residues within 4Å:- Chain D: R.99, E.102
- Chain E: Y.201, K.221, E.224
3 PLIP interactions:3 interactions with chain E- Hydrogen bonds: E:K.221, E:K.221, E:E.224
MPD.28: 2 residues within 4Å:- Chain G: R.183, Q.187
2 PLIP interactions:2 interactions with chain G- Hydrogen bonds: G:R.183, G:Q.187
MPD.29: 3 residues within 4Å:- Chain G: Q.146, I.342
- Ligands: SO4.7
2 PLIP interactions:2 interactions with chain G- Hydrophobic interactions: G:Q.146, G:I.342
MPD.55: 8 residues within 4Å:- Chain H: T.58, A.61, K.263, A.266, D.267
- Chain I: N.207, N.209, H.210
3 PLIP interactions:2 interactions with chain I, 1 interactions with chain H- Hydrophobic interactions: I:N.209, H:A.266
- Hydrogen bonds: I:N.207
MPD.56: 5 residues within 4Å:- Chain K: R.99, E.102
- Chain L: Y.201, K.221, E.224
4 PLIP interactions:4 interactions with chain L- Hydrogen bonds: L:Y.201, L:K.221, L:K.221, L:E.224
MPD.57: 2 residues within 4Å:- Chain N: R.183, Q.187
2 PLIP interactions:2 interactions with chain N- Hydrogen bonds: N:R.183, N:Q.187
MPD.58: 3 residues within 4Å:- Chain N: Q.146, I.342
- Ligands: SO4.36
2 PLIP interactions:2 interactions with chain N- Hydrophobic interactions: N:Q.146, N:I.342
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Shin, D.S. et al., Full-length archaeal Rad51 structure and mutants: Mechanisms for RAD51 assembly and control by BRCA2. Embo J. (2003)
- Release Date
- 2003-09-09
- Peptides
- DNA repair and recombination protein rad51: ABCDEFGHIJKLMN
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
AI
BJ
CK
DL
EM
FN
G
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.85 Å
- Oligo State
- homo-14-mer
- Ligands
- 14 x SO4: SULFATE ION(Non-functional Binders)
- 18 x IMD: IMIDAZOLE(Non-covalent)
- 18 x GOL: GLYCEROL(Non-functional Binders)
- 8 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Shin, D.S. et al., Full-length archaeal Rad51 structure and mutants: Mechanisms for RAD51 assembly and control by BRCA2. Embo J. (2003)
- Release Date
- 2003-09-09
- Peptides
- DNA repair and recombination protein rad51: ABCDEFGHIJKLMN
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
AI
BJ
CK
DL
EM
FN
G