- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.85 Å
- Oligo State
- homo-14-mer
- Ligands
- 14 x SO4: SULFATE ION(Non-functional Binders)
- 18 x IMD: IMIDAZOLE(Non-covalent)
IMD.2: 3 residues within 4Å:- Chain A: R.99
- Chain B: Y.201, K.221
Ligand excluded by PLIPIMD.3: 5 residues within 4Å:- Chain A: K.317, G.321, R.323
- Chain M: K.319, G.320
Ligand excluded by PLIPIMD.4: 4 residues within 4Å:- Chain A: K.319, G.320
- Chain M: G.321, R.323
Ligand excluded by PLIPIMD.5: 3 residues within 4Å:- Chain A: Y.201, E.224
- Chain G: R.99
Ligand excluded by PLIPIMD.8: 6 residues within 4Å:- Chain A: R.251
- Chain B: G.250, R.251, G.252, A.253, L.254
Ligand excluded by PLIPIMD.9: 6 residues within 4Å:- Chain B: K.319, G.320, G.321
- Chain L: K.317, G.321, R.323
Ligand excluded by PLIPIMD.10: 3 residues within 4Å:- Chain B: G.321, R.323
- Chain L: K.319
Ligand excluded by PLIPIMD.14: 2 residues within 4Å:- Chain B: R.99
- Chain C: Y.201
Ligand excluded by PLIPIMD.23: 5 residues within 4Å:- Chain E: R.99
- Chain F: Y.201, K.221, E.224, L.225
Ligand excluded by PLIPIMD.31: 3 residues within 4Å:- Chain H: R.99
- Chain I: Y.201, K.221
Ligand excluded by PLIPIMD.32: 5 residues within 4Å:- Chain F: K.319, G.320
- Chain H: K.317, G.321, R.323
Ligand excluded by PLIPIMD.33: 4 residues within 4Å:- Chain F: G.321, R.323
- Chain H: K.319, G.320
Ligand excluded by PLIPIMD.34: 3 residues within 4Å:- Chain H: Y.201, E.224
- Chain N: R.99
Ligand excluded by PLIPIMD.37: 6 residues within 4Å:- Chain H: R.251
- Chain I: G.250, R.251, G.252, A.253, L.254
Ligand excluded by PLIPIMD.38: 6 residues within 4Å:- Chain E: K.317, G.321, R.323
- Chain I: K.319, G.320, G.321
Ligand excluded by PLIPIMD.39: 3 residues within 4Å:- Chain E: K.319
- Chain I: G.321, R.323
Ligand excluded by PLIPIMD.43: 2 residues within 4Å:- Chain I: R.99
- Chain J: Y.201
Ligand excluded by PLIPIMD.52: 5 residues within 4Å:- Chain L: R.99
- Chain M: Y.201, K.221, E.224, L.225
Ligand excluded by PLIP- 18 x GOL: GLYCEROL(Non-functional Binders)
GOL.6: 2 residues within 4Å:- Chain A: K.198
- Chain G: R.99
Ligand excluded by PLIPGOL.11: 2 residues within 4Å:- Chain A: R.99
- Chain B: K.198
Ligand excluded by PLIPGOL.15: 2 residues within 4Å:- Chain C: R.99
- Chain D: K.198
Ligand excluded by PLIPGOL.16: 2 residues within 4Å:- Chain B: R.99
- Chain C: K.198
Ligand excluded by PLIPGOL.18: 7 residues within 4Å:- Chain D: T.96, M.98, Y.103, K.106, N.273
- Chain E: A.203, R.204
Ligand excluded by PLIPGOL.20: 2 residues within 4Å:- Chain D: R.99
- Chain E: K.198
Ligand excluded by PLIPGOL.24: 6 residues within 4Å:- Chain F: Q.156, L.157, L.191, E.195, H.199, R.230
Ligand excluded by PLIPGOL.25: 2 residues within 4Å:- Chain E: R.99
- Chain F: K.198
Ligand excluded by PLIPGOL.26: 2 residues within 4Å:- Chain F: R.99
- Chain G: K.198
Ligand excluded by PLIPGOL.35: 2 residues within 4Å:- Chain H: K.198
- Chain N: R.99
Ligand excluded by PLIPGOL.40: 2 residues within 4Å:- Chain H: R.99
- Chain I: K.198
Ligand excluded by PLIPGOL.44: 2 residues within 4Å:- Chain J: R.99
- Chain K: K.198
Ligand excluded by PLIPGOL.45: 2 residues within 4Å:- Chain I: R.99
- Chain J: K.198
Ligand excluded by PLIPGOL.47: 7 residues within 4Å:- Chain K: T.96, M.98, Y.103, K.106, N.273
- Chain L: A.203, R.204
Ligand excluded by PLIPGOL.49: 2 residues within 4Å:- Chain K: R.99
- Chain L: K.198
Ligand excluded by PLIPGOL.53: 6 residues within 4Å:- Chain M: Q.156, L.157, L.191, E.195, H.199, R.230
Ligand excluded by PLIPGOL.54: 2 residues within 4Å:- Chain L: R.99
- Chain M: K.198
Ligand excluded by PLIPGOL.55: 2 residues within 4Å:- Chain M: R.99
- Chain N: K.198
Ligand excluded by PLIP- 8 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
MPD.12: 8 residues within 4Å:- Chain A: T.58, A.61, K.263, A.266, D.267
- Chain B: N.207, N.209, H.210
3 PLIP interactions:2 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:N.209, A:A.266
- Hydrogen bonds: B:N.207
MPD.21: 5 residues within 4Å:- Chain D: R.99, E.102
- Chain E: Y.201, K.221, E.224
3 PLIP interactions:3 interactions with chain E- Hydrogen bonds: E:K.221, E:K.221, E:E.224
MPD.28: 2 residues within 4Å:- Chain G: R.183, Q.187
2 PLIP interactions:2 interactions with chain G- Hydrogen bonds: G:R.183, G:Q.187
MPD.29: 3 residues within 4Å:- Chain G: Q.146, I.342
- Ligands: SO4.27
2 PLIP interactions:2 interactions with chain G- Hydrophobic interactions: G:Q.146, G:I.342
MPD.41: 8 residues within 4Å:- Chain H: T.58, A.61, K.263, A.266, D.267
- Chain I: N.207, N.209, H.210
3 PLIP interactions:2 interactions with chain I, 1 interactions with chain H- Hydrophobic interactions: I:N.209, H:A.266
- Hydrogen bonds: I:N.207
MPD.50: 5 residues within 4Å:- Chain K: R.99, E.102
- Chain L: Y.201, K.221, E.224
4 PLIP interactions:4 interactions with chain L- Hydrogen bonds: L:Y.201, L:K.221, L:K.221, L:E.224
MPD.57: 2 residues within 4Å:- Chain N: R.183, Q.187
2 PLIP interactions:2 interactions with chain N- Hydrogen bonds: N:R.183, N:Q.187
MPD.58: 3 residues within 4Å:- Chain N: Q.146, I.342
- Ligands: SO4.56
2 PLIP interactions:2 interactions with chain N- Hydrophobic interactions: N:Q.146, N:I.342
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Shin, D.S. et al., Full-length archaeal Rad51 structure and mutants: Mechanisms for RAD51 assembly and control by BRCA2. Embo J. (2003)
- Release Date
- 2003-09-09
- Peptides
- DNA repair and recombination protein rad51: ABCDEFGHIJKLMN
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
AI
BJ
CK
DL
EM
FN
G
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.85 Å
- Oligo State
- homo-14-mer
- Ligands
- 14 x SO4: SULFATE ION(Non-functional Binders)
- 18 x IMD: IMIDAZOLE(Non-covalent)
- 18 x GOL: GLYCEROL(Non-functional Binders)
- 8 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Shin, D.S. et al., Full-length archaeal Rad51 structure and mutants: Mechanisms for RAD51 assembly and control by BRCA2. Embo J. (2003)
- Release Date
- 2003-09-09
- Peptides
- DNA repair and recombination protein rad51: ABCDEFGHIJKLMN
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
AI
BJ
CK
DL
EM
FN
G