SMTL ID : 1q3c.1 (1 other biounit)

Crystal structure of the DNA repair enzyme endonuclease-VIII (Nei) from E. coli: The E2A mutant at 2.3 resolution.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.237, C.240, C.257, C.260 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.237, A:C.240, A:C.257, A:C.260

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: H.184, H.262 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.184, A:H.262, H2O.3 MG.3: 1 residues within 4Å: Chain A: H.220 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.220, H2O.2

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 3 residues within 4Å: Chain A: N.12, A.15, V.76 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.12 Water bridges: A:V.76 GOL.5: 6 residues within 4Å: Chain A: Q.160, L.163, A.164, G.165, L.166 Ligands: GOL.6 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.163, A:G.165, A:L.166 GOL.6: 5 residues within 4Å: Chain A: L.158, L.166, G.167, N.168 Ligands: GOL.5 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.158, A:N.168 Water bridges: A:Y.169

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Golan, G. et al., Structure of the uncomplexed DNA repair enzyme endonuclease VIII indicates significant interdomain flexibility. Nucleic Acids Res. (2005)

Release Date

2004-08-03

Peptides

Endonuclease VIII: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Endonuclease VIII

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