SMTL ID : 1q7b.1

The structure of betaketoacyl-[ACP] reductase from E. coli in complex with NADP+

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

homo-tetramer

Ligands

8 x CA: CALCIUM ION(Non-covalent)

CA.1: 4 residues within 4Å: Chain A: E.233, T.234 Chain D: E.233, T.234 5 PLIP interactions: 2 interactions with chain D, 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: D:E.233, D:T.234, A:E.233, A:T.234, H2O.5 CA.2: 1 residues within 4Å: Chain A: K.54 No protein-ligand interaction detected (PLIP) CA.3: 1 residues within 4Å: Chain A: N.145 No protein-ligand interaction detected (PLIP) CA.5: 4 residues within 4Å: Chain B: E.233, T.234 Chain C: E.233, T.234 5 PLIP interactions: 1 interactions with chain C, 2 interactions with chain B, 2 Ligand-Water interactions Metal complexes: C:T.234, B:E.233, B:T.234, H2O.10, H2O.11 CA.6: 2 residues within 4Å: Chain B: G.50, G.53 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:G.50, B:G.53, H2O.8 CA.7: 1 residues within 4Å: Chain B: N.145 No protein-ligand interaction detected (PLIP) CA.9: 1 residues within 4Å: Chain C: N.145 No protein-ligand interaction detected (PLIP) CA.11: 1 residues within 4Å: Chain D: N.145 No protein-ligand interaction detected (PLIP)

4 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.4: 25 residues within 4Å: Chain A: G.12, A.13, S.14, R.15, I.17, A.36, T.37, L.58, N.59, V.60, N.86, A.87, G.88, I.89, T.109, I.136, G.137, S.138, Y.151, K.155, P.181, G.182, F.183, I.184, T.186 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:P.181 Hydrogen bonds: A:G.12, A:S.14, A:S.14, A:T.37, A:N.59, A:V.60, A:N.86, A:N.86, A:G.88, A:Y.151, A:K.155, A:I.184, A:I.184 Water bridges: A:G.12, A:T.109 Salt bridges: A:R.15, A:R.15 NAP.8: 27 residues within 4Å: Chain B: G.12, A.13, S.14, R.15, I.17, A.36, T.37, L.58, N.59, V.60, T.61, N.86, A.87, G.88, I.89, T.109, I.136, G.137, S.138, Y.151, K.155, P.181, G.182, F.183, I.184, T.186, M.188 18 PLIP interactions: 18 interactions with chain B Hydrophobic interactions: B:P.181 Hydrogen bonds: B:G.12, B:S.14, B:S.14, B:T.37, B:N.59, B:V.60, B:N.86, B:N.86, B:G.88, B:K.155, B:I.184, B:T.186, B:T.186 Water bridges: B:G.12, B:R.15 Salt bridges: B:R.15, B:R.15 NAP.10: 25 residues within 4Å: Chain C: G.12, A.13, S.14, R.15, I.17, A.36, T.37, L.58, N.59, V.60, T.61, N.86, A.87, G.88, I.89, T.109, I.136, G.137, S.138, Y.151, K.155, P.181, G.182, I.184, T.186 19 PLIP interactions: 19 interactions with chain C Hydrophobic interactions: C:P.181 Hydrogen bonds: C:G.12, C:S.14, C:S.14, C:T.37, C:N.59, C:V.60, C:N.86, C:N.86, C:G.88, C:K.155, C:I.184, C:I.184 Water bridges: C:G.12, C:R.15, C:S.38, C:S.38 Salt bridges: C:R.15, C:R.15 NAP.12: 24 residues within 4Å: Chain D: G.12, A.13, S.14, R.15, I.17, A.36, T.37, L.58, N.59, V.60, N.86, A.87, G.88, I.89, T.109, I.136, G.137, S.138, Y.151, K.155, P.181, G.182, I.184, T.186 18 PLIP interactions: 18 interactions with chain D Hydrophobic interactions: D:P.181 Hydrogen bonds: D:G.12, D:S.14, D:S.14, D:R.15, D:T.37, D:S.38, D:N.59, D:V.60, D:N.86, D:N.86, D:G.88, D:Y.151, D:K.155, D:I.184, D:I.184 Water bridges: D:G.12 Salt bridges: D:R.15

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Price, A.C. et al., Cofactor-Induced Conformational Rearrangements Establish a Catalytically Competent Active Site and a Proton Relay Conduit in FabG. Structure (2004)

Release Date

2004-02-17

Peptides

3-oxoacyl-[acyl-carrier protein] reductase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

3-oxoacyl-[acyl-carrier protein] reductase

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