SMTL ID : 1q9x.1 (3 other biounits)

Crystal structure of Enterobacteria phage RB69 gp43 DNA polymerase complexed with tetrahydrofuran containing DNA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.69 Å

Oligo State

monomer

Ligands

1 x 3DR: 1',2'-DIDEOXYRIBOFURANOSE-5'-PHOSPHATE(Non-covalent)

3DR.1: 6 residues within 4Å: Chain A: C.2, G.3 Chain C: F.359, S.360, P.361, I.362 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:I.362

1 x DOC: 2',3'-DIDEOXYCYTIDINE-5'-MONOPHOSPHATE(Non-covalent)

DOC.2: 9 residues within 4Å: Chain A: G.3, G.4 Chain B: C.13 Chain C: D.621, T.622, D.623, Y.708, M.728 Ligands: CA.3 1 PLIP interactions: 1 interactions with chain C Hydrophobic interactions: C:T.622

2 x CA: CALCIUM ION(Non-covalent)

CA.3: 3 residues within 4Å: Chain C: D.623, S.624 Ligands: DOC.2 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:D.623, C:S.624 CA.4: 1 residues within 4Å: Chain C: D.684 2 PLIP interactions: 1 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:D.684, H2O.6

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Freisinger, E. et al., Lesion (in)tolerance reveals insights into DNA replication fidelity. Embo J. (2004)

Release Date

2004-04-27

Peptides

DNA polymerase: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

C
A

DNA polymerase

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