SMTL ID : 1qqp.5 (4 other biounits)

FOOT-AND-MOUTH DISEASE VIRUS/ OLIGOSACCHARIDE RECEPTOR COMPLEX.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-5-5-5-5-mer

Ligands

5 x IDX- SGN- IDS- SGN- IDX: 2-O-sulfo-alpha-L-gulopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-idopyranuronic acid-(1-4)-2-deoxy-6-O-sulfo-2-(sulfoamino)-alpha-D-glucopyranose-(1-4)-2-O-sulfo-alpha-L-gulopyranuronic acid

IDX-SGN-IDS-SGN-IDX.1: 12 residues within 4Å: Chain A: H.195, T.197 Chain B: K.134, R.135, Y.138 Chain S: R.56, F.57, E.58, G.59, G.60, K.84, N.88 14 PLIP interactions: 10 interactions with chain S, 3 interactions with chain B, 1 interactions with chain A Water bridges: S:R.56, S:K.84, B:K.134, B:K.134, S:K.84, S:K.84, S:K.84, S:K.84, S:R.56, S:R.56 Salt bridges: S:K.84, B:K.134, A:H.195, S:K.84, S:R.56, S:K.84 Hydrogen bonds: S:R.56, S:G.59, S:G.60, S:K.84, S:K.84, S:K.84 IDX-SGN-IDS-SGN-IDX.2: 12 residues within 4Å: Chain C: R.56, F.57, E.58, G.59, G.60, K.84, N.88 Chain E: H.195, T.197 Chain F: K.134, R.135, Y.138 14 PLIP interactions: 10 interactions with chain C, 3 interactions with chain F, 1 interactions with chain E Water bridges: C:R.56, C:K.84, F:K.134, F:K.134, C:K.84, C:K.84, C:K.84, C:K.84, C:R.56, C:R.56 Salt bridges: C:K.84, F:K.134, E:H.195, C:K.84, C:R.56, C:K.84 Hydrogen bonds: C:R.56, C:G.59, C:G.60, C:K.84, C:K.84, C:K.84 IDX-SGN-IDS-SGN-IDX.3: 12 residues within 4Å: Chain G: R.56, F.57, E.58, G.59, G.60, K.84, N.88 Chain I: H.195, T.197 Chain J: K.134, R.135, Y.138 14 PLIP interactions: 10 interactions with chain G, 1 interactions with chain I, 3 interactions with chain J Water bridges: G:R.56, G:K.84, J:K.134, J:K.134, G:K.84, G:K.84, G:K.84, G:K.84, G:R.56, G:R.56 Salt bridges: G:K.84, I:H.195, J:K.134, G:K.84, G:R.56, G:K.84 Hydrogen bonds: G:R.56, G:G.59, G:G.60, G:K.84, G:K.84, G:K.84 IDX-SGN-IDS-SGN-IDX.4: 12 residues within 4Å: Chain K: R.56, F.57, E.58, G.59, G.60, K.84, N.88 Chain M: H.195, T.197 Chain N: K.134, R.135, Y.138 14 PLIP interactions: 10 interactions with chain K, 1 interactions with chain M, 3 interactions with chain N Water bridges: K:R.56, K:K.84, N:K.134, N:K.134, K:K.84, K:K.84, K:K.84, K:K.84, K:R.56, K:R.56 Salt bridges: K:K.84, M:H.195, N:K.134, K:K.84, K:R.56, K:K.84 Hydrogen bonds: K:R.56, K:G.59, K:G.60, K:K.84, K:K.84, K:K.84 IDX-SGN-IDS-SGN-IDX.5: 12 residues within 4Å: Chain O: R.56, F.57, E.58, G.59, G.60, K.84, N.88 Chain Q: H.195, T.197 Chain R: K.134, R.135, Y.138 14 PLIP interactions: 3 interactions with chain R, 10 interactions with chain O, 1 interactions with chain Q Water bridges: R:K.134, R:K.134, O:R.56, O:K.84, O:K.84, O:K.84, O:K.84, O:K.84, O:R.56, O:R.56 Salt bridges: R:K.134, O:K.84, Q:H.195, O:K.84, O:R.56, O:K.84 Hydrogen bonds: O:R.56, O:G.59, O:G.60, O:K.84, O:K.84, O:K.84

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fry, E.E. et al., The structure and function of a foot-and-mouth disease virus-oligosaccharide receptor complex. EMBO J. (1999)

Release Date

1999-06-18

Peptides

PROTEIN (GENOME POLYPROTEIN): AEIMQ
PROTEIN (GENOME POLYPROTEIN): BFJNR
PROTEIN (GENOME POLYPROTEIN): CGKOS
PROTEIN (GENOME POLYPROTEIN): DHLPT

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
1

E
1

I
1

M
1

Q
1

B
2

F
2

J
2

N
2

R
2

C
3

G
3

K
3

O
3

S
3

D
4

H
4

L
4

P
4

T
4

PROTEIN (GENOME POLYPROTEIN)

PROTEIN (GENOME POLYPROTEIN)

PROTEIN (GENOME POLYPROTEIN)

PROTEIN (GENOME POLYPROTEIN)

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