SMTL ID : 1qvr.1 (1 other biounit)

Crystal Structure Analysis of ClpB

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-trimer

Ligands

23 x PT: PLATINUM (II) ION(Non-covalent)(Non-functional Binders)

PT.1: 2 residues within 4Å: Chain A: K.606, M.619 Ligand excluded by PLIP PT.2: 2 residues within 4Å: Chain A: M.24, K.73 Ligand excluded by PLIP PT.3: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP PT.4: 1 residues within 4Å: Chain A: M.234 Ligand excluded by PLIP PT.5: 2 residues within 4Å: Chain A: T.625, M.628 Ligand excluded by PLIP PT.6: 1 residues within 4Å: Chain A: M.394 Ligand excluded by PLIP PT.7: 4 residues within 4Å: Chain A: A.390, R.393, M.394 Chain B: Q.184 Ligand excluded by PLIP PT.8: 2 residues within 4Å: Chain A: M.624, Y.627 Ligand excluded by PLIP PT.11: 2 residues within 4Å: Chain B: L.20, M.24 Ligand excluded by PLIP PT.12: 2 residues within 4Å: Chain B: K.606, M.619 Ligand excluded by PLIP PT.13: 3 residues within 4Å: Chain B: M.394 Chain C: R.180, P.221 Ligand excluded by PLIP PT.14: 2 residues within 4Å: Chain B: M.394 Chain C: R.180 Ligand excluded by PLIP PT.15: 2 residues within 4Å: Chain B: T.625, M.628 Ligand excluded by PLIP PT.16: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP PT.17: 2 residues within 4Å: Chain B: M.624, Y.627 Ligand excluded by PLIP PT.18: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP PT.21: 2 residues within 4Å: Chain C: K.606, M.619 Ligand excluded by PLIP PT.22: 2 residues within 4Å: Chain C: M.624, Y.627 Ligand excluded by PLIP PT.23: 2 residues within 4Å: Chain C: T.625, M.628 Ligand excluded by PLIP PT.24: 2 residues within 4Å: Chain C: M.234, F.247 Ligand excluded by PLIP PT.25: 2 residues within 4Å: Chain C: R.391, M.394 Ligand excluded by PLIP PT.26: 1 residues within 4Å: Chain C: M.24 Ligand excluded by PLIP PT.27: 1 residues within 4Å: Chain C: M.394 Ligand excluded by PLIP

6 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.9: 18 residues within 4Å: Chain A: P.171, V.172, I.173, R.175, E.199, P.200, G.201, V.202, G.203, K.204, T.205, A.206, D.270, I.340, L.344, Y.348, P.378, I.382 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:I.173, A:R.175, A:E.199, A:G.201, A:V.202, A:G.203, A:K.204, A:K.204, A:T.205, A:T.205, A:T.205, A:A.206, A:D.270 ANP.10: 14 residues within 4Å: Chain A: R.559, V.560, V.561, T.597, G.598, V.599, G.600, K.601, T.602, E.603, I.765, Q.769, A.805, R.806 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:V.561, A:G.598, A:V.599, A:V.599, A:G.600, A:T.602, A:T.602, A:T.602, A:E.603, A:E.603, A:R.806 ANP.19: 19 residues within 4Å: Chain B: P.171, V.172, I.173, R.175, E.199, P.200, G.201, V.202, G.203, K.204, T.205, A.206, E.271, I.340, L.344, I.382 Chain C: P.318, E.321, R.322 13 PLIP interactions: 11 interactions with chain B, 2 interactions with chain C Hydrogen bonds: B:I.173, B:I.173, B:E.199, B:G.201, B:G.203, B:K.204, B:K.204, B:T.205, B:T.205, B:T.205, B:A.206, C:E.321, C:R.322 ANP.20: 16 residues within 4Å: Chain B: R.559, V.560, V.561, T.597, G.598, V.599, G.600, K.601, T.602, E.603, R.621, I.765, Q.769, A.805, R.806 Chain C: N.746 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:V.561, B:G.598, B:V.599, B:V.599, B:G.600, B:T.602, B:T.602, B:T.602, B:E.603, B:E.603, B:R.621 ANP.28: 16 residues within 4Å: Chain C: P.171, V.172, I.173, P.200, G.201, V.202, G.203, K.204, T.205, A.206, E.209, D.270, I.340, L.344, P.378, I.382 11 PLIP interactions: 11 interactions with chain C Hydrogen bonds: C:I.173, C:I.173, C:G.201, C:G.203, C:K.204, C:K.204, C:T.205, C:T.205, C:T.205, C:A.206, C:E.209 ANP.29: 14 residues within 4Å: Chain C: R.559, V.560, V.561, T.597, G.598, V.599, G.600, K.601, T.602, E.603, I.765, Q.769, A.805, R.806 12 PLIP interactions: 12 interactions with chain C Hydrogen bonds: C:V.561, C:G.598, C:V.599, C:V.599, C:G.600, C:T.602, C:T.602, C:T.602, C:E.603, C:E.603, C:E.603, C:R.806

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, S. et al., The Structure of ClpB: A Molecular Chaperone that Rescues Proteins from an Aggregated State. Cell(Cambridge,Mass.) (2003)

Release Date

2003-10-21

Peptides

ClpB protein: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

ClpB protein

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