SMTL ID : 1r31.2 (2 other biounits)

HMG-CoA reductase from Pseudomonas mevalonii complexed with HMG-CoA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-hexamer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: A.184, M.185, G.186, A.187, N.188, T.189 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:M.185, A:G.186, A:A.187, A:N.188, A:T.189, A:T.189 SO4.4: 6 residues within 4Å: Chain B: A.184, M.185, G.186, A.187, N.188, G.329 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:M.185, B:G.186, B:A.187, B:N.188 SO4.6: 6 residues within 4Å: Chain C: A.184, M.185, G.186, A.187, N.188, T.189 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:M.185, C:G.186, C:A.187, C:N.188, C:T.189 SO4.9: 6 residues within 4Å: Chain D: A.184, M.185, G.186, A.187, N.188, G.329 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:M.185, D:G.186, D:A.187, D:N.188 SO4.11: 6 residues within 4Å: Chain E: A.184, M.185, G.186, A.187, N.188, T.189 5 PLIP interactions: 5 interactions with chain E Hydrogen bonds: E:M.185, E:G.186, E:A.187, E:N.188, E:T.189 SO4.14: 6 residues within 4Å: Chain F: A.184, M.185, G.186, A.187, N.188, G.329 4 PLIP interactions: 4 interactions with chain F Hydrogen bonds: F:M.185, F:G.186, F:A.187, F:N.188

3 x COA: COENZYME A(Non-covalent)

COA.2: 19 residues within 4Å: Chain A: R.6, R.11, N.67, E.83, P.84, S.85, I.86, A.88, S.91, Y.92, K.95, Q.364, G.367, A.368, R.370, A.371 Chain B: E.52, N.53 Ligands: MEV.3 20 PLIP interactions: 18 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:A.88, A:Y.92 Hydrogen bonds: A:S.66, A:S.66, A:N.67, A:R.370 Water bridges: A:L.7, A:A.9, A:R.11, A:R.11, A:R.11, A:S.91, A:Y.92, A:A.371, B:N.53, B:N.53 Salt bridges: A:R.11, A:K.95 pi-Cation interactions: A:R.11, A:R.11 COA.7: 19 residues within 4Å: Chain C: R.6, R.11, N.67, E.83, P.84, S.85, I.86, A.88, S.91, Y.92, K.95, Q.364, G.367, A.368, R.370, A.371 Chain D: E.52, N.53 Ligands: MEV.8 20 PLIP interactions: 2 interactions with chain D, 18 interactions with chain C Water bridges: D:N.53, D:N.53, C:L.7, C:A.9, C:R.11, C:R.11, C:R.11, C:S.91, C:Y.92, C:A.371 Hydrophobic interactions: C:A.88, C:Y.92 Hydrogen bonds: C:S.66, C:S.66, C:N.67, C:R.370 Salt bridges: C:R.11, C:K.95 pi-Cation interactions: C:R.11, C:R.11 COA.12: 19 residues within 4Å: Chain E: R.6, R.11, N.67, E.83, P.84, S.85, I.86, A.88, S.91, Y.92, K.95, Q.364, G.367, A.368, R.370, A.371 Chain F: E.52, N.53 Ligands: MEV.13 20 PLIP interactions: 18 interactions with chain E, 2 interactions with chain F Hydrophobic interactions: E:A.88, E:Y.92 Hydrogen bonds: E:S.66, E:S.66, E:N.67, E:R.370 Water bridges: E:L.7, E:A.9, E:R.11, E:R.11, E:R.11, E:S.91, E:Y.92, E:A.371, F:N.53, F:N.53 Salt bridges: E:R.11, E:K.95 pi-Cation interactions: E:R.11, E:R.11

6 x MEV: (R)-MEVALONATE(Non-covalent)

MEV.3: 11 residues within 4Å: Chain A: E.83, R.261, T.264, K.267, G.268, N.271, A.368, L.372, I.377 Chain B: I.213 Ligands: COA.2 6 PLIP interactions: 5 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:A.368, A:I.377 Hydrogen bonds: A:N.271 Water bridges: A:G.268, B:N.216 Salt bridges: A:R.261 MEV.5: 9 residues within 4Å: Chain B: E.83, R.261, T.264, H.265, K.267, G.268, N.271, A.368, L.372 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.271 Water bridges: B:G.268 Salt bridges: B:R.261 MEV.8: 11 residues within 4Å: Chain C: E.83, R.261, T.264, K.267, G.268, N.271, A.368, L.372, I.377 Chain D: I.213 Ligands: COA.7 6 PLIP interactions: 5 interactions with chain C, 1 interactions with chain D Hydrophobic interactions: C:A.368, C:I.377 Hydrogen bonds: C:N.271 Water bridges: C:G.268, D:N.216 Salt bridges: C:R.261 MEV.10: 9 residues within 4Å: Chain D: E.83, R.261, T.264, H.265, K.267, G.268, N.271, A.368, L.372 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:N.271 Water bridges: D:G.268 Salt bridges: D:R.261 MEV.13: 11 residues within 4Å: Chain E: E.83, R.261, T.264, K.267, G.268, N.271, A.368, L.372, I.377 Chain F: I.213 Ligands: COA.12 6 PLIP interactions: 1 interactions with chain F, 5 interactions with chain E Water bridges: F:N.216, E:G.268 Hydrophobic interactions: E:A.368, E:I.377 Hydrogen bonds: E:N.271 Salt bridges: E:R.261 MEV.15: 9 residues within 4Å: Chain F: E.83, R.261, T.264, H.265, K.267, G.268, N.271, A.368, L.372 3 PLIP interactions: 3 interactions with chain F Hydrogen bonds: F:N.271 Water bridges: F:G.268 Salt bridges: F:R.261

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Watson, J.M. et al., Structural Investigations of the Basis for Stereoselectivity from the Binary Complex of HMG-CoA Reductase. To be Published

Release Date

2003-10-14

Peptides

3-hydroxy-3-methylglutaryl-coenzyme A reductase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

3-hydroxy-3-methylglutaryl-coenzyme A reductase

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