SMTL ID : 1r8s.1 (1 other biounit)

ARF1[DELTA1-17]-GDP IN COMPLEX WITH A SEC7 DOMAIN CARRYING THE MUTATION OF THE CATALYTIC GLUTAMATE TO LYSINE

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.46 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 16 residues within 4Å: Chain A: L.8, D.9, A.10, A.11, G.12, K.13, T.14, T.15, N.109, K.110, D.112, L.113, C.142, A.143, T.144 Chain B: K.107 24 PLIP interactions: 20 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:L.8, A:A.10, A:A.11, A:G.12, A:K.13, A:T.14, A:T.14, A:T.14, A:T.15, A:T.15, A:N.109, A:K.110, A:K.110, A:A.143, A:T.144 Water bridges: A:K.13, A:T.14, A:T.15, B:K.107, B:K.107 Salt bridges: A:K.13, A:D.112, B:K.107, B:K.107

1 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.2: 3 residues within 4Å: Chain A: M.1, R.2, Q.69 No protein-ligand interaction detected (PLIP)

3 x FMT: FORMIC ACID(Non-functional Binders)

FMT.3: 5 residues within 4Å: Chain A: L.94, L.131, R.132, H.133, R.134 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.132, A:H.133, A:R.134 FMT.4: 2 residues within 4Å: Chain A: R.62, H.63 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.62, A:R.62 FMT.7: 3 residues within 4Å: Chain B: N.90, Q.93, S.188 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:N.90, B:Q.93, B:S.188 Water bridges: B:R.96, B:R.96, B:R.96, B:R.96, B:E.192

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 6 residues within 4Å: Chain B: G.67, R.69, K.107, Q.109, K.110, R.113 8 PLIP interactions: 7 interactions with chain B, 1 interactions with chain A Water bridges: B:R.69, B:K.107, B:K.110, A:A.10 Salt bridges: B:R.69, B:K.107, B:K.110, B:R.113

1 x SO3: SULFITE ION(Non-covalent)

SO3.6: 4 residues within 4Å: Chain A: N.35 Chain B: P.105, G.106, K.107 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:N.35, B:G.106, B:K.107

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Renault, L. et al., Structural snapshots of the mechanism and inhibition of a guanine nucleotide exchange factor. Nature (2003)

Release Date

2004-01-20

Peptides

ADP-ribosylation factor 1: A
Arno: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
E

ADP-ribosylation factor 1

Arno

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