SMTL ID : 1rb8.4 (4 other biounits)

The phiX174 DNA binding protein J in two different capsid environments.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.50 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x DC- DA- DA- DA: DNA (5'-D(P*CP*AP*AP*A)-3')(Non-covalent)

DC-DA-DA-DA.1: 10 residues within 4Å: Chain A: H.204, E.208, F.212 Chain C: A.27, R.28, Y.31, G.34, Q.35 Ligands: DC.2, DC.5 Protein-ligand interaction information (PLIP) not available

6 x DC: 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE(Non-functional Binders)(Non-covalent)

DC.2: 1 residues within 4Å: Ligands: DC-DA-DA-DA.1 6 PLIP interactions: 4 interactions with chain A, 2 interactions with chain C Hydrophobic interactions: A:F.277 Hydrogen bonds: A:K.167, A:D.242, C:Q.36 Salt bridges: A:R.10, C:K.21 DC.3: 0 residues within 4Å: (No contacts) Protein-ligand interaction information (PLIP) not available DC.4: 2 residues within 4Å: Chain A: R.10, F.277 Protein-ligand interaction information (PLIP) not available DC.5: 4 residues within 4Å: Chain A: K.167 Chain C: Q.35, Q.36 Ligands: DC-DA-DA-DA.1 Protein-ligand interaction information (PLIP) not available DC.6: 2 residues within 4Å: Chain A: D.242 Chain C: K.25 Protein-ligand interaction information (PLIP) not available DC.7: 2 residues within 4Å: Chain C: R.18, K.21 Protein-ligand interaction information (PLIP) not available

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bernal, R.A. et al., The phiX174 Protein J Mediates DNA Packaging and Viral Attachment to Host Cells. J.Mol.Biol. (2004)

Release Date

2004-04-13

Peptides

Capsid protein: A
Major spike protein: B
Small core protein: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
F

B
G

C
J

Capsid protein

Major spike protein

Small core protein

Related Entries With Identical Sequence