SMTL ID : 1rkb.1

The structure of adrenal gland protein AD-004

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 8 residues within 4Å: Chain A: T.12, P.13, G.14, V.15, G.16, K.17, T.18, R.110 14 PLIP interactions: 14 interactions with chain A Hydrogen bonds: A:G.14, A:V.15, A:G.16, A:K.17, A:T.18 Water bridges: A:K.17, A:K.17, A:K.17, A:T.19, A:R.106, A:R.110, A:R.110 Salt bridges: A:K.17, A:R.110 SO4.2: 5 residues within 4Å: Chain A: Y.130, V.142, H.143, Q.144 Ligands: LI.6 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.130, A:Q.144, A:Q.144 SO4.3: 2 residues within 4Å: Chain A: W.167, H.171 2 PLIP interactions: 2 interactions with chain A Water bridges: A:H.171 Salt bridges: A:H.171 SO4.4: 3 residues within 4Å: Chain A: E.165, Q.166, K.169 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.165, A:E.165, A:Q.166 Water bridges: A:Q.166 Salt bridges: A:K.169 SO4.5: 4 residues within 4Å: Chain A: K.138, E.139, E.140 Ligands: LI.7 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.139, A:E.139

3 x LI: LITHIUM ION(Non-covalent)

LI.6: 2 residues within 4Å: Chain A: Q.144 Ligands: SO4.2 No protein-ligand interaction detected (PLIP) LI.7: 4 residues within 4Å: Chain A: K.138, E.139, E.140 Ligands: SO4.5 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.140 LI.8: 2 residues within 4Å: Chain A: E.59, F.84 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.59

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ren, H. et al., The crystal structure of human adenylate kinase 6: An adenylate kinase localized to the cell nucleus. Proc.Natl.Acad.Sci.Usa (2005)

Release Date

2005-01-11

Peptides

Protein AD-004: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Protein AD-004