- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-tetramer
- Ligands
- 16 x SO4: SULFATE ION(Non-functional Binders)
- 4 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
NDP.5: 21 residues within 4Å:- Chain A: G.8, G.10, R.11, I.12, N.34, D.35, A.36, G.37, D.79, R.80, G.98, T.99, G.100, T.122, A.123, C.153, N.316, E.317, Y.320
- Chain C: S.192
- Ligands: SO4.1
30 PLIP interactions:28 interactions with chain A, 2 interactions with chain C- Hydrophobic interactions: A:I.12, A:Y.320
- Hydrogen bonds: A:R.11, A:I.12, A:N.34, A:D.35, A:A.36, A:G.37, A:R.80, A:R.80, A:N.316, C:S.192, C:S.192
- Water bridges: A:N.7, A:G.10, A:G.13, A:R.14, A:R.14, A:G.100, A:T.122, A:G.184, A:G.184, A:G.184, A:G.184, A:G.184, A:G.184, A:E.317, A:E.317
- Salt bridges: A:R.80
- pi-Cation interactions: A:R.80
NDP.10: 21 residues within 4Å:- Chain B: G.8, G.10, R.11, I.12, N.34, D.35, A.36, G.37, D.79, R.80, G.98, T.99, G.100, T.122, A.123, C.153, N.316, E.317, Y.320
- Chain D: S.192
- Ligands: SO4.6
30 PLIP interactions:28 interactions with chain B, 2 interactions with chain D- Hydrophobic interactions: B:I.12, B:Y.320
- Hydrogen bonds: B:R.11, B:I.12, B:N.34, B:D.35, B:A.36, B:G.37, B:R.80, B:R.80, B:N.316, D:S.192, D:S.192
- Water bridges: B:N.7, B:G.10, B:G.13, B:R.14, B:R.14, B:G.100, B:T.122, B:G.184, B:G.184, B:G.184, B:G.184, B:G.184, B:G.184, B:E.317, B:E.317
- Salt bridges: B:R.80
- pi-Cation interactions: B:R.80
NDP.15: 21 residues within 4Å:- Chain A: S.192
- Chain C: G.8, G.10, R.11, I.12, N.34, D.35, A.36, G.37, D.79, R.80, G.98, T.99, G.100, T.122, A.123, C.153, N.316, E.317, Y.320
- Ligands: SO4.11
28 PLIP interactions:26 interactions with chain C, 2 interactions with chain A- Hydrophobic interactions: C:I.12, C:Y.320
- Hydrogen bonds: C:R.11, C:I.12, C:N.34, C:A.36, C:G.37, C:R.80, C:R.80, C:T.122, C:N.316, A:S.192, A:S.192
- Water bridges: C:N.7, C:G.10, C:G.13, C:R.14, C:R.14, C:G.100, C:T.122, C:G.184, C:G.184, C:G.184, C:G.184, C:G.184, C:G.184
- Salt bridges: C:R.80
- pi-Cation interactions: C:R.80
NDP.20: 21 residues within 4Å:- Chain B: S.192
- Chain D: G.8, G.10, R.11, I.12, N.34, D.35, A.36, G.37, D.79, R.80, G.98, T.99, G.100, T.122, A.123, C.153, N.316, E.317, Y.320
- Ligands: SO4.16
28 PLIP interactions:26 interactions with chain D, 2 interactions with chain B- Hydrophobic interactions: D:I.12, D:Y.320
- Hydrogen bonds: D:R.11, D:I.12, D:N.34, D:A.36, D:G.37, D:R.80, D:R.80, D:T.122, D:N.316, B:S.192, B:S.192
- Water bridges: D:N.7, D:G.10, D:G.13, D:R.14, D:R.14, D:G.100, D:T.122, D:G.184, D:G.184, D:G.184, D:G.184, D:G.184, D:G.184
- Salt bridges: D:R.80
- pi-Cation interactions: D:R.80
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sparla, F. et al., Coenzyme Site-directed Mutants of Photosynthetic A(4)-GAPDH Show Selectively Reduced NADPH-dependent Catalysis, Similar to Regulatory AB-GAPDH Inhibited by Oxidized Thioredoxin. J.Mol.Biol. (2004)
- Release Date
- 2004-07-27
- Peptides
- Glyceraldehyde 3-phosphate dehydrogenase A: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
OB
OC
OD
O
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-tetramer
- Ligands
- 16 x SO4: SULFATE ION(Non-functional Binders)
- 4 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sparla, F. et al., Coenzyme Site-directed Mutants of Photosynthetic A(4)-GAPDH Show Selectively Reduced NADPH-dependent Catalysis, Similar to Regulatory AB-GAPDH Inhibited by Oxidized Thioredoxin. J.Mol.Biol. (2004)
- Release Date
- 2004-07-27
- Peptides
- Glyceraldehyde 3-phosphate dehydrogenase A: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
OB
OC
OD
O