SMTL ID : 1ro5.2 (2 other biounits)

Crystal Structure of the AHL Synthase LasI

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-12-mer

Ligands

48 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: R.33, K.34, G.35, W.36, D.37, V.38 Ligand excluded by PLIP SO4.2: 5 residues within 4Å: Chain A: R.154 Chain I: R.154 Chain K: R.154 Ligands: SO4.42, SO4.52 Ligand excluded by PLIP SO4.3: 5 residues within 4Å: Chain A: R.172 Chain I: R.172 Chain K: R.172 Ligands: SO4.43, SO4.53 Ligand excluded by PLIP SO4.4: 6 residues within 4Å: Chain A: T.145, G.147, V.148 Chain K: V.146, K.150, R.172 Ligand excluded by PLIP SO4.6: 6 residues within 4Å: Chain B: R.33, K.34, G.35, W.36, D.37, V.38 Ligand excluded by PLIP SO4.7: 5 residues within 4Å: Chain B: R.154 Chain F: R.154 Chain J: R.154 Ligands: SO4.27, SO4.47 Ligand excluded by PLIP SO4.8: 5 residues within 4Å: Chain B: R.172 Chain F: R.172 Chain J: R.172 Ligands: SO4.28, SO4.48 Ligand excluded by PLIP SO4.9: 6 residues within 4Å: Chain B: T.145, G.147, V.148 Chain F: V.146, K.150, R.172 Ligand excluded by PLIP SO4.11: 6 residues within 4Å: Chain C: R.33, K.34, G.35, W.36, D.37, V.38 Ligand excluded by PLIP SO4.12: 5 residues within 4Å: Chain C: R.154 Chain E: R.154 Chain G: R.154 Ligands: SO4.22, SO4.32 Ligand excluded by PLIP SO4.13: 5 residues within 4Å: Chain C: R.172 Chain E: R.172 Chain G: R.172 Ligands: SO4.23, SO4.33 Ligand excluded by PLIP SO4.14: 6 residues within 4Å: Chain C: T.145, G.147, V.148 Chain G: V.146, K.150, R.172 Ligand excluded by PLIP SO4.16: 6 residues within 4Å: Chain D: R.33, K.34, G.35, W.36, D.37, V.38 Ligand excluded by PLIP SO4.17: 5 residues within 4Å: Chain D: R.154 Chain H: R.154 Chain L: R.154 Ligands: SO4.37, SO4.57 Ligand excluded by PLIP SO4.18: 5 residues within 4Å: Chain D: R.172 Chain H: R.172 Chain L: R.172 Ligands: SO4.38, SO4.58 Ligand excluded by PLIP SO4.19: 6 residues within 4Å: Chain D: T.145, G.147, V.148 Chain H: V.146, K.150, R.172 Ligand excluded by PLIP SO4.21: 6 residues within 4Å: Chain E: R.33, K.34, G.35, W.36, D.37, V.38 Ligand excluded by PLIP SO4.22: 5 residues within 4Å: Chain C: R.154 Chain E: R.154 Chain G: R.154 Ligands: SO4.12, SO4.32 Ligand excluded by PLIP SO4.23: 5 residues within 4Å: Chain C: R.172 Chain E: R.172 Chain G: R.172 Ligands: SO4.13, SO4.33 Ligand excluded by PLIP SO4.24: 6 residues within 4Å: Chain C: V.146, K.150, R.172 Chain E: T.145, G.147, V.148 Ligand excluded by PLIP SO4.26: 6 residues within 4Å: Chain F: R.33, K.34, G.35, W.36, D.37, V.38 Ligand excluded by PLIP SO4.27: 5 residues within 4Å: Chain B: R.154 Chain F: R.154 Chain J: R.154 Ligands: SO4.7, SO4.47 Ligand excluded by PLIP SO4.28: 5 residues within 4Å: Chain B: R.172 Chain F: R.172 Chain J: R.172 Ligands: SO4.8, SO4.48 Ligand excluded by PLIP SO4.29: 6 residues within 4Å: Chain F: T.145, G.147, V.148 Chain J: V.146, K.150, R.172 Ligand excluded by PLIP SO4.31: 6 residues within 4Å: Chain G: R.33, K.34, G.35, W.36, D.37, V.38 Ligand excluded by PLIP SO4.32: 5 residues within 4Å: Chain C: R.154 Chain E: R.154 Chain G: R.154 Ligands: SO4.12, SO4.22 Ligand excluded by PLIP SO4.33: 5 residues within 4Å: Chain C: R.172 Chain E: R.172 Chain G: R.172 Ligands: SO4.13, SO4.23 Ligand excluded by PLIP SO4.34: 6 residues within 4Å: Chain E: V.146, K.150, R.172 Chain G: T.145, G.147, V.148 Ligand excluded by PLIP SO4.36: 6 residues within 4Å: Chain H: R.33, K.34, G.35, W.36, D.37, V.38 Ligand excluded by PLIP SO4.37: 5 residues within 4Å: Chain D: R.154 Chain H: R.154 Chain L: R.154 Ligands: SO4.17, SO4.57 Ligand excluded by PLIP SO4.38: 5 residues within 4Å: Chain D: R.172 Chain H: R.172 Chain L: R.172 Ligands: SO4.18, SO4.58 Ligand excluded by PLIP SO4.39: 6 residues within 4Å: Chain H: T.145, G.147, V.148 Chain L: V.146, K.150, R.172 Ligand excluded by PLIP SO4.41: 6 residues within 4Å: Chain I: R.33, K.34, G.35, W.36, D.37, V.38 Ligand excluded by PLIP SO4.42: 5 residues within 4Å: Chain A: R.154 Chain I: R.154 Chain K: R.154 Ligands: SO4.2, SO4.52 Ligand excluded by PLIP SO4.43: 5 residues within 4Å: Chain A: R.172 Chain I: R.172 Chain K: R.172 Ligands: SO4.3, SO4.53 Ligand excluded by PLIP SO4.44: 6 residues within 4Å: Chain A: V.146, K.150, R.172 Chain I: T.145, G.147, V.148 Ligand excluded by PLIP SO4.46: 6 residues within 4Å: Chain J: R.33, K.34, G.35, W.36, D.37, V.38 Ligand excluded by PLIP SO4.47: 5 residues within 4Å: Chain B: R.154 Chain F: R.154 Chain J: R.154 Ligands: SO4.7, SO4.27 Ligand excluded by PLIP SO4.48: 5 residues within 4Å: Chain B: R.172 Chain F: R.172 Chain J: R.172 Ligands: SO4.8, SO4.28 Ligand excluded by PLIP SO4.49: 6 residues within 4Å: Chain B: V.146, K.150, R.172 Chain J: T.145, G.147, V.148 Ligand excluded by PLIP SO4.51: 6 residues within 4Å: Chain K: R.33, K.34, G.35, W.36, D.37, V.38 Ligand excluded by PLIP SO4.52: 5 residues within 4Å: Chain A: R.154 Chain I: R.154 Chain K: R.154 Ligands: SO4.2, SO4.42 Ligand excluded by PLIP SO4.53: 5 residues within 4Å: Chain A: R.172 Chain I: R.172 Chain K: R.172 Ligands: SO4.3, SO4.43 Ligand excluded by PLIP SO4.54: 6 residues within 4Å: Chain I: V.146, K.150, R.172 Chain K: T.145, G.147, V.148 Ligand excluded by PLIP SO4.56: 6 residues within 4Å: Chain L: R.33, K.34, G.35, W.36, D.37, V.38 Ligand excluded by PLIP SO4.57: 5 residues within 4Å: Chain D: R.154 Chain H: R.154 Chain L: R.154 Ligands: SO4.17, SO4.37 Ligand excluded by PLIP SO4.58: 5 residues within 4Å: Chain D: R.172 Chain H: R.172 Chain L: R.172 Ligands: SO4.18, SO4.38 Ligand excluded by PLIP SO4.59: 6 residues within 4Å: Chain D: V.146, K.150, R.172 Chain L: T.145, G.147, V.148 Ligand excluded by PLIP

12 x ZN: ZINC ION(Non-covalent)

ZN.5: 4 residues within 4Å: Chain A: G.1, S.2, H.3 Chain B: L.133 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.3 ZN.10: 4 residues within 4Å: Chain B: G.1, S.2, H.3 Chain C: L.133 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:H.3 ZN.15: 4 residues within 4Å: Chain A: L.133 Chain C: G.1, S.2, H.3 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:H.3 ZN.20: 4 residues within 4Å: Chain D: G.1, S.2, H.3 Chain E: L.133 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:H.3 ZN.25: 4 residues within 4Å: Chain E: G.1, S.2, H.3 Chain F: L.133 1 PLIP interactions: 1 interactions with chain E Metal complexes: E:H.3 ZN.30: 4 residues within 4Å: Chain D: L.133 Chain F: G.1, S.2, H.3 1 PLIP interactions: 1 interactions with chain F Metal complexes: F:H.3 ZN.35: 4 residues within 4Å: Chain G: G.1, S.2, H.3 Chain H: L.133 1 PLIP interactions: 1 interactions with chain G Metal complexes: G:H.3 ZN.40: 4 residues within 4Å: Chain H: G.1, S.2, H.3 Chain I: L.133 1 PLIP interactions: 1 interactions with chain H Metal complexes: H:H.3 ZN.45: 4 residues within 4Å: Chain G: L.133 Chain I: G.1, S.2, H.3 1 PLIP interactions: 1 interactions with chain I Metal complexes: I:H.3 ZN.50: 4 residues within 4Å: Chain J: G.1, S.2, H.3 Chain K: L.133 1 PLIP interactions: 1 interactions with chain J Metal complexes: J:H.3 ZN.55: 4 residues within 4Å: Chain K: G.1, S.2, H.3 Chain L: L.133 1 PLIP interactions: 1 interactions with chain K Metal complexes: K:H.3 ZN.60: 4 residues within 4Å: Chain J: L.133 Chain L: G.1, S.2, H.3 1 PLIP interactions: 1 interactions with chain L Metal complexes: L:H.3

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gould, T.A. et al., Structure of the Pseudomonas aeruginosa acyl-homoserinelactone synthase LasI. Mol.Microbiol. (2004)

Release Date

2004-08-24

Peptides

Autoinducer synthesis protein lasI: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

G
A

H
A

I
A

J
A

K
A

L
A

Autoinducer synthesis protein lasI

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