SMTL ID : 1rrg.1

NON-MYRISTOYLATED RAT ADP-RIBOSYLATION FACTOR-1 COMPLEXED WITH GDP, DIMERIC CRYSTAL FORM

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: T.31, E.54 Ligands: GDP.2 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:T.31, H2O.3, H2O.6 MG.3: 3 residues within 4Å: Chain B: T.31, E.54 Ligands: GDP.4 4 PLIP interactions: 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:T.31, H2O.7, H2O.7, H2O.7

2 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.2: 19 residues within 4Å: Chain A: L.25, D.26, A.27, A.28, G.29, K.30, T.31, T.32, D.67, N.126, K.127, D.129, L.130, C.159, A.160, T.161 Chain B: G.50, N.52 Ligands: MG.1 22 PLIP interactions: 20 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:L.25, A:A.27, A:A.28, A:G.29, A:K.30, A:T.31, A:T.32, A:T.32, A:T.32, A:D.67, A:N.126, A:K.127, A:K.127, A:A.160, A:T.161, B:G.50, B:N.52 Water bridges: A:K.30, A:T.31, A:T.31 Salt bridges: A:K.30, A:D.129 GDP.4: 19 residues within 4Å: Chain A: I.49, G.50, N.52 Chain B: L.25, D.26, A.27, A.28, G.29, K.30, T.31, T.32, N.126, K.127, D.129, L.130, C.159, A.160, T.161 Ligands: MG.3 21 PLIP interactions: 19 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:A.27, B:A.28, B:G.29, B:K.30, B:T.31, B:T.32, B:T.32, B:T.32, B:N.126, B:K.127, B:K.127, B:A.160, B:T.161, A:G.50, A:N.52 Water bridges: B:T.31, B:T.31, B:D.67, B:D.67 Salt bridges: B:K.30, B:D.129

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Greasley, S.E. et al., The structure of rat ADP-ribosylation factor-1 (ARF-1) complexed to GDP determined from two different crystal forms. Nat.Struct.Biol. (1995)

Release Date

1996-06-20

Peptides

RAT ADP-RIBOSYLATION FACTOR-1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

RAT ADP-RIBOSYLATION FACTOR-1

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