SMTL ID : 1rvx.1 (1 other biounit)

1934 H1 Hemagglutinin in complex with LSTA

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-3-3-mer

Ligands

3 x NAG- GAL- SIA: N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-GAL-SIA.1: 13 residues within 4Å: Chain A: Y.95, G.134, V.135, T.136, A.137, W.153, T.155, H.183, P.186, E.190, L.194, Q.226, G.228 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:Q.226, A:Q.226, A:Y.95, A:V.135, A:T.136, A:A.137, A:H.183, A:Q.226, A:Q.226 Hydrophobic interactions: A:W.153, A:T.155 Water bridges: A:V.135 NAG-GAL-SIA.2: 10 residues within 4Å: Chain C: Y.95, G.134, V.135, T.136, A.137, W.153, H.183, E.190, L.194, Q.226 10 PLIP interactions: 10 interactions with chain C Hydrogen bonds: C:Q.226, C:Q.226, C:Y.95, C:V.135, C:T.136, C:A.137, C:H.183, C:Q.226, C:Q.226 Hydrophobic interactions: C:W.153 Water bridges: C:V.135, C:S.145 NAG-GAL-SIA.3: 13 residues within 4Å: Chain E: Y.95, G.134, V.135, T.136, A.137, W.153, T.155, H.183, P.186, E.190, L.194, Q.226, G.228 11 PLIP interactions: 11 interactions with chain E Hydrogen bonds: E:Q.226, E:Q.226, E:Y.95, E:V.135, E:T.136, E:A.137, E:E.190, E:Q.226, E:Q.226 Hydrophobic interactions: E:W.153, E:T.155 Water bridges: E:V.135, E:S.145

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG.4: 1 residues within 4Å: Chain A: N.27 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.27, A:N.27 NAG.5: 1 residues within 4Å: Chain A: N.290 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.290 NAG.6: 3 residues within 4Å: Chain B: E.147, E.150, N.154 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.154 NAG.7: 1 residues within 4Å: Chain C: N.15 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.15

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gamblin, S.J. et al., The structure and receptor binding properties of the 1918 influenza hemagglutinin. Science (2004)

Release Date

2004-03-30

Peptides

hemagglutinin: ACE
Hemagglutinin: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

B
B

D
D

F
F

hemagglutinin

Hemagglutinin

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