SMTL ID : 1rzo.2 (1 other biounit)

Agglutinin from Ricinus communis with galactoaza

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.63 Å

Oligo State

hetero-1-1-mer

Ligands

5 x GAL: beta-D-galactopyranose(Non-covalent)(Non-functional Binders)

GAL.1: 2 residues within 4Å: Chain A: I.8, N.10 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.10, A:N.10 GAL.4: 4 residues within 4Å: Chain B: W.93, N.95, Y.125 Ligands: SO4.8 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:N.95, B:Y.125, B:Y.125, B:Y.125 GAL.5: 2 residues within 4Å: Chain B: I.10, N.135 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:I.10, B:I.10, B:N.135 GAL.6: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) GAL.7: 1 residues within 4Å: Chain B: N.79 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.79, B:N.79

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 2 residues within 4Å: Chain A: N.194, R.196 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.194 Water bridges: A:G.141 Salt bridges: A:R.196 SO4.3: 4 residues within 4Å: Chain A: F.119, G.120, N.122, R.125 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:A.118, A:G.120, A:N.122 Salt bridges: A:R.125 SO4.8: 1 residues within 4Å: Ligands: GAL.4 No protein-ligand interaction detected (PLIP) SO4.9: 4 residues within 4Å: Chain B: P.71, R.72, Q.121, T.122 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Q.121, B:T.122, B:T.122 Salt bridges: B:R.72

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gabdoulkhakov, A.G. et al., Structure-function investigation complex of Agglutinin from Ricinus communis with galactoaza. To be Published

Release Date

2004-12-28

Peptides

Agglutinin: A
Agglutinin: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Agglutinin

Agglutinin

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