SMTL ID : 1s5p.1

Structure and substrate binding properties of cobB, a Sir2 homolog protein deacetylase from Eschericia coli.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.96 Å

Oligo State

monomer

Ligands

1 x LYS- GLY- GLY- ALA- ALY- ARG- HIS- ARG: HISTONE H4 (RESIDUES 12-19)(Non-covalent)

LYS-GLY-GLY-ALA-ALY-ARG-HIS-ARG.1: 17 residues within 4Å: Chain A: A.23, H.108, V.148, V.149, W.150, F.151, G.152, E.153, M.154, P.155, Y.162, G.178, H.179, V.180, Y.181, P.182, E.189 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:V.148, A:V.149, A:F.151, A:V.180, A:Y.181 Hydrogen bonds: A:H.108, A:V.149, A:G.152, A:E.153, A:H.179, A:H.179, A:Y.181, A:Y.181, A:Y.181, A:E.189 Water bridges: A:Y.162, A:S.177 pi-Cation interactions: A:H.179

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 3 residues within 4Å: Chain A: C.116, S.119, C.135 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:C.116, A:C.135

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhao, K. et al., Structure and Substrate Binding Properties of cobB, a Sir2 Homolog Protein Deacetylase from Eschericia coli. J.Mol.Biol. (2004)

Release Date

2004-03-23

Peptides

NAD-dependent deacetylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

NAD-dependent deacetylase