SMTL ID : 1s7c.1

Crystal structure of MES buffer bound form of glyceraldehyde 3-phosphate dehydrogenase from Escherichia coli

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.04 Å

Oligo State

homo-tetramer

Ligands

20 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: G.11, R.12, I.13, A.181 Ligand excluded by PLIP SO4.2: 8 residues within 4Å: Chain A: T.175, H.177, S.207, S.208, T.209, A.230, R.232 Ligands: MES.6 Ligand excluded by PLIP SO4.3: 7 residues within 4Å: Chain A: V.131, K.132, G.133, A.134, N.135, F.136, D.137 Ligand excluded by PLIP SO4.4: 4 residues within 4Å: Chain A: P.128, M.129, N.135, K.217 Ligand excluded by PLIP SO4.5: 3 residues within 4Å: Chain A: T.252, Y.253, E.254 Ligand excluded by PLIP SO4.7: 4 residues within 4Å: Chain B: G.11, R.12, I.13, A.181 Ligand excluded by PLIP SO4.8: 8 residues within 4Å: Chain B: T.175, H.177, S.207, S.208, T.209, A.230, R.232 Ligands: MES.12 Ligand excluded by PLIP SO4.9: 7 residues within 4Å: Chain B: V.131, K.132, G.133, A.134, N.135, F.136, D.137 Ligand excluded by PLIP SO4.10: 4 residues within 4Å: Chain B: P.128, M.129, N.135, K.217 Ligand excluded by PLIP SO4.11: 3 residues within 4Å: Chain B: T.252, Y.253, E.254 Ligand excluded by PLIP SO4.13: 4 residues within 4Å: Chain C: G.11, R.12, I.13, A.181 Ligand excluded by PLIP SO4.14: 8 residues within 4Å: Chain C: T.175, H.177, S.207, S.208, T.209, A.230, R.232 Ligands: MES.18 Ligand excluded by PLIP SO4.15: 7 residues within 4Å: Chain C: V.131, K.132, G.133, A.134, N.135, F.136, D.137 Ligand excluded by PLIP SO4.16: 4 residues within 4Å: Chain C: P.128, M.129, N.135, K.217 Ligand excluded by PLIP SO4.17: 3 residues within 4Å: Chain C: T.252, Y.253, E.254 Ligand excluded by PLIP SO4.19: 4 residues within 4Å: Chain D: G.11, R.12, I.13, A.181 Ligand excluded by PLIP SO4.20: 8 residues within 4Å: Chain D: T.175, H.177, S.207, S.208, T.209, A.230, R.232 Ligands: MES.24 Ligand excluded by PLIP SO4.21: 7 residues within 4Å: Chain D: V.131, K.132, G.133, A.134, N.135, F.136, D.137 Ligand excluded by PLIP SO4.22: 4 residues within 4Å: Chain D: P.128, M.129, N.135, K.217 Ligand excluded by PLIP SO4.23: 3 residues within 4Å: Chain D: T.252, Y.253, E.254 Ligand excluded by PLIP

4 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.6: 8 residues within 4Å: Chain A: P.122, S.149, C.150, T.151, H.177, T.209, G.210 Ligands: SO4.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.149, A:G.210 MES.12: 8 residues within 4Å: Chain B: P.122, S.149, C.150, T.151, H.177, T.209, G.210 Ligands: SO4.8 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.149, B:G.210 MES.18: 8 residues within 4Å: Chain C: P.122, S.149, C.150, T.151, H.177, T.209, G.210 Ligands: SO4.14 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:S.149, C:G.210 MES.24: 8 residues within 4Å: Chain D: P.122, S.149, C.150, T.151, H.177, T.209, G.210 Ligands: SO4.20 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:S.149, D:G.210

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shin, D.H. et al., Crystal structure of MES buffer bound form of glyceraldehyde 3-phosphate dehydrogenase from Escherichia coli. To be Published

Release Date

2004-08-10

Peptides

Glyceraldehyde 3-phosphate dehydrogenase A: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

Glyceraldehyde 3-phosphate dehydrogenase A

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