SMTL ID : 1s9a.1

Crystal Structure of 4-Chlorocatechol 1,2-dioxygenase from Rhodococcus opacus 1CP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.47 Å

Oligo State

homo-dimer

Ligands

2 x FE: FE (III) ION(Non-covalent)

FE.1: 5 residues within 4Å: Chain A: Y.134, Y.169, H.194, H.196 Ligands: BEZ.4 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:Y.134, A:Y.169, A:H.194, A:H.196 FE.5: 5 residues within 4Å: Chain B: Y.134, Y.169, H.194, H.196 Ligands: BEZ.7 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:Y.134, B:Y.169, B:H.194, B:H.196

2 x HGP: (1-HEXADECANOYL-2-TETRADECANOYL-GLYCEROL-3-YL) PHOSPHONYL CHOLINE(Non-covalent)

HGP.2: 15 residues within 4Å: Chain A: N.3, V.6, L.9, F.13, M.38 Chain B: F.20, E.30, T.33, I.34, Y.37, W.50, L.51, F.55, Y.184 Ligands: HGP.6 16 PLIP interactions: 13 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:F.20, B:E.30, B:I.34, B:I.34, B:Y.37, B:Y.37, B:W.50, B:W.50, B:W.50, B:L.51, B:F.55, B:Y.184, B:Y.184, A:L.9, A:F.13, A:F.13 HGP.6: 16 residues within 4Å: Chain A: I.26, E.30, T.33, Y.37, M.38, W.47, W.50, L.51, Y.184 Chain B: A.2, V.6, L.9, F.13, I.17, M.38 Ligands: HGP.2 14 PLIP interactions: 5 interactions with chain A, 9 interactions with chain B Hydrophobic interactions: A:I.26, A:E.30, A:W.47, A:W.50, A:W.50, B:V.6, B:V.6, B:L.9, B:F.13, B:F.13, B:F.13, B:F.13, B:I.17 Hydrogen bonds: B:A.2

1 x TAM: TRIS(HYDROXYETHYL)AMINOMETHANE(Non-covalent)

TAM.3: 10 residues within 4Å: Chain A: P.48, D.52, E.56, Q.75, G.76, P.77 Chain B: T.28, Y.31, E.32, M.35 8 PLIP interactions: 3 interactions with chain B, 5 interactions with chain A Hydrophobic interactions: B:E.32 Hydrogen bonds: B:E.32, A:E.56 Water bridges: B:T.28, A:E.56, A:Q.75, A:Q.75, A:Q.75

2 x BEZ: BENZOIC ACID(Non-covalent)

BEZ.4: 14 residues within 4Å: Chain A: L.49, D.52, A.53, I.74, G.76, P.77, F.78, Y.134, Y.169, R.191, H.194, H.196, C.224 Ligands: FE.1 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.49, A:D.52, A:I.74, A:P.77 Salt bridges: A:R.191, A:H.194, A:H.196 BEZ.7: 15 residues within 4Å: Chain B: L.49, D.52, A.53, I.74, G.76, P.77, F.78, Y.134, Y.169, R.191, H.194, H.196, Q.210, C.224 Ligands: FE.5 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:L.49, B:D.52, B:I.74 Hydrogen bonds: B:Q.210 Water bridges: B:F.78 Salt bridges: B:R.191, B:H.194, B:H.196

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ferraroni, M. et al., Crystal structure of 4-chlorocatechol 1,2-dioxygenase from the chlorophenol-utilizing gram-positive Rhodococcus opacus 1CP. J.Biol.Chem. (2004)

Release Date

2004-06-01

Peptides

Chlorocatechol 1,2-dioxygenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Chlorocatechol 1,2-dioxygenase

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